Variant report

Variant	rs546564
Chromosome Location	chr15:73627770-73627771
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:73627682..73629991-chr15:73637117..73639189,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11634084	0.85[EUR][1000 genomes]
rs11634147	0.81[EUR][1000 genomes]
rs12050685	0.89[CEU][hapmap]
rs12050774	0.92[CEU][hapmap]
rs1479338	0.81[CEU][hapmap]
rs1479340	0.84[CEU][hapmap]
rs1564345	0.84[CEU][hapmap]
rs17762600	0.92[CEU][hapmap]
rs17829830	0.92[CEU][hapmap]
rs17829957	0.92[CEU][hapmap]
rs1812835	0.81[CEU][hapmap]
rs1979409	0.81[CEU][hapmap]
rs2127277	0.84[CEU][hapmap]
rs2415148	0.81[CEU][hapmap]
rs3784801	0.81[EUR][1000 genomes]
rs3985587	0.81[EUR][1000 genomes]
rs4777598	0.81[EUR][1000 genomes]
rs55853625	0.81[EUR][1000 genomes]
rs56118677	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62015484	0.82[EUR][1000 genomes]
rs62015499	0.83[EUR][1000 genomes]
rs62015500	0.82[EUR][1000 genomes]
rs62015502	0.83[EUR][1000 genomes]
rs62015504	0.85[EUR][1000 genomes]
rs7172021	0.84[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904343	chr15:73396760-73775043	Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv457202	chr15:73612377-73680301	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv569949	chr15:73612377-73680301	Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv524049	chr15:73612833-73680301	Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73617800-73634600	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr15:73621200-73632600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr15:73621200-73634000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr15:73622000-73634000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr15:73622200-73630000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr15:73622200-73634400	Weak transcription	Brain Germinal Matrix	brain
7	chr15:73623000-73628000	Weak transcription	Fetal Brain Female	brain
8	chr15:73623200-73627800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr15:73623200-73628000	Weak transcription	Right Atrium	heart
10	chr15:73623600-73635400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr15:73623800-73632000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr15:73624000-73635400	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr15:73624600-73635200	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr15:73624600-73635600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr15:73624800-73632400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr15:73624800-73632600	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr15:73625800-73628000	Weak transcription	Spleen	Spleen
18	chr15:73626000-73637800	Enhancers	Fetal Heart	heart
19	chr15:73626400-73628800	Enhancers	Right Ventricle	heart
20	chr15:73627000-73628400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr15:73627200-73628200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr15:73627200-73628400	Enhancers	Left Ventricle	heart
23	chr15:73627400-73628800	Enhancers	Fetal Brain Male	brain
24	chr15:73627600-73628000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links