Variant report

Variant	rs62016797
Chromosome Location	chr15:73352037-73352038
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:73340283..73347207-chr15:73351084..73357651,9	MCF-7	breast:

Variant related genes	Relation type
ENSG00000067141	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1023924	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1038137	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10467948	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11072403	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12050774	0.81[ASN][1000 genomes]
rs13379875	0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1964543	0.82[EUR][1000 genomes]
rs2169951	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4132536	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4545783	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4609810	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4776624	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4776625	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4777590	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55836604	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55916847	0.83[EUR][1000 genomes]
rs55925663	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56269104	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56377702	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62016803	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62016805	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62016806	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62016808	0.82[EUR][1000 genomes]
rs62016809	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62016811	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62016813	0.82[EUR][1000 genomes]
rs62016814	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62016849	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62016851	0.82[ASN][1000 genomes]
rs7165610	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8026121	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9972347	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3352103	chr15:73191535-73454001	Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv482421	chr15:73279141-73426897	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
3	nsv904338	chr15:73313691-73483718	Enhancers Active TSS Strong transcription ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv517966	chr15:73349633-73488753	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv525462	chr15:73349633-73563495	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73346400-73353400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr15:73346400-73355000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr15:73346400-73355400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr15:73346800-73353200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr15:73347000-73358800	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr15:73347200-73352600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr15:73347200-73354400	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr15:73347600-73354200	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr15:73348200-73355600	Weak transcription	Fetal Lung	lung
10	chr15:73348600-73353000	Weak transcription	Aorta	Aorta
11	chr15:73348600-73353400	Weak transcription	Duodenum Mucosa	Duodenum
12	chr15:73348600-73353600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr15:73348600-73355000	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr15:73348800-73353200	Weak transcription	Fetal Intestine Large	intestine
15	chr15:73349000-73353600	Weak transcription	Psoas Muscle	Psoas
16	chr15:73349200-73353800	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr15:73349200-73355000	Weak transcription	Brain Cingulate Gyrus	brain
18	chr15:73349200-73355000	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr15:73349400-73353200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr15:73349400-73353400	Weak transcription	Brain Hippocampus Middle	brain
21	chr15:73349400-73353400	Weak transcription	Fetal Brain Female	brain
22	chr15:73349400-73353600	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr15:73349400-73354400	Weak transcription	Brain Anterior Caudate	brain
24	chr15:73349400-73367000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr15:73349800-73353600	Weak transcription	Brain Angular Gyrus	brain
26	chr15:73351000-73355000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr15:73351200-73352200	Enhancers	Fetal Intestine Small	intestine
28	chr15:73351200-73353000	Weak transcription	Brain Substantia Nigra	brain
29	chr15:73352000-73353200	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr15:73352000-73365000	Weak transcription	Skeletal Muscle Male	skeletal muscle

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