Variant report
| Variant | rs4376227 |
|---|---|
| Chromosome Location | chr5:57169306-57169307 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:4)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:4 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | CEBPB | chr5:57169035-57169377 | HepG2 | liver: | n/a | chr5:57169212-57169223 chr5:57169211-57169224 chr5:57169213-57169222 chr5:57169211-57169222 |
| 2 | CEBPB | chr5:57169035-57169402 | K562 | blood: | n/a | chr5:57169212-57169223 chr5:57169211-57169224 chr5:57169213-57169222 chr5:57169211-57169222 |
| 3 | CEBPB | chr5:57169047-57169397 | IMR90 | lung: | n/a | chr5:57169212-57169223 chr5:57169211-57169224 chr5:57169213-57169222 chr5:57169211-57169222 |
| 4 | CEBPB | chr5:57169037-57169388 | A549 | lung: | n/a | chr5:57169212-57169223 chr5:57169211-57169224 chr5:57169213-57169222 chr5:57169211-57169222 |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr5:57168184..57169711-chr5:57754494..57756798,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000266864 | TF binding region |
| ENSG00000145632 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:12)
| rs_ID | r2[population] |
|---|---|
| rs12659861 | 0.94[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs13355565 | 1.00[CHB][hapmap];0.94[JPT][hapmap] |
| rs1816392 | 0.82[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs2408853 | 0.94[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs35310736 | 0.97[ASN][1000 genomes] |
| rs4700232 | 0.93[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs4700234 | 0.98[ASN][1000 genomes] |
| rs4700235 | 0.98[ASN][1000 genomes] |
| rs56221026 | 0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs57813032 | 0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs60584920 | 0.94[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs9968558 | 0.94[AMR][1000 genomes];0.95[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv525330 | chr5:56931673-57320343 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 2 | esv2756302 | chr5:56978143-57180143 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv830310 | chr5:56989346-57176006 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
