Variant report

Variant	rs4700235
Chromosome Location	chr5:57176680-57176681
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12659861	0.95[ASN][1000 genomes]
rs1816392	0.95[ASN][1000 genomes]
rs2408853	0.95[ASN][1000 genomes]
rs35310736	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4376227	0.98[ASN][1000 genomes]
rs4700232	0.83[ASN][1000 genomes]
rs4700234	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56221026	0.97[ASN][1000 genomes]
rs57813032	0.96[ASN][1000 genomes]
rs60584920	0.95[ASN][1000 genomes]
rs733990	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9968558	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525330	chr5:56931673-57320343	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv2756302	chr5:56978143-57180143	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57175000-57185200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr5:57176600-57183400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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