Variant report
| Variant | rs437691 |
|---|---|
| Chromosome Location | chr6:28518316-28518317 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:28511881..28516576-chr6:28517392..28521415,6 | K562 | blood: | |
| 2 | chr6:28517755..28520128-chr6:28599875..28602085,2 | K562 | blood: | |
| 3 | chr6:28509014..28511009-chr6:28516572..28518393,2 | K562 | blood: | |
| 4 | chr6:28511955..28518467-chr6:28519043..28523058,10 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000271440 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:15)
| rs_ID | r2[population] |
|---|---|
| rs1003359 | 0.83[AMR][1000 genomes] |
| rs2143766 | 0.87[ASN][1000 genomes] |
| rs2227228 | 0.90[JPT][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes] |
| rs2859355 | 0.90[JPT][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes] |
| rs389118 | 0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs392230 | 0.87[ASN][1000 genomes] |
| rs393414 | 0.92[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs406113 | 0.89[AMR][1000 genomes] |
| rs434112 | 0.89[AMR][1000 genomes] |
| rs451774 | 0.92[AFR][1000 genomes];0.84[AMR][1000 genomes] |
| rs454182 | 0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4713167 | 0.81[AMR][1000 genomes] |
| rs6456822 | 0.83[AMR][1000 genomes] |
| rs6456823 | 0.83[AMR][1000 genomes] |
| rs7743046 | 0.81[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv462666 | chr6:28417222-28574415 | Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 28 gene(s) | inside rSNPs | diseases |
| 2 | nsv601210 | chr6:28417222-28574415 | Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 28 gene(s) | inside rSNPs | diseases |
| 3 | nsv1020689 | chr6:28449137-28635171 | Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 33 gene(s) | inside rSNPs | diseases |
| 4 | nsv830621 | chr6:28473951-28675709 | Bivalent/Poised TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 30 gene(s) | inside rSNPs | diseases |
| 5 | nsv601211 | chr6:28483482-28521316 | Bivalent Enhancer Active TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 9 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:28510800-28521600 | Weak transcription | Pancreas | Pancrea |
| 2 | chr6:28517800-28518400 | Enhancers | K562 | blood |
