Variant report

Variant	rs7743046
Chromosome Location	chr6:28475368-28475369
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:28474691..28477083-chr6:28480160..28482306,2	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1003359	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16894139	0.87[ASN][1000 genomes]
rs2078035	0.87[ASN][1000 genomes]
rs2078439	0.87[ASN][1000 genomes]
rs2191037	0.85[ASN][1000 genomes]
rs2227228	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2531822	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2859355	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2859356	0.85[ASN][1000 genomes]
rs2859358	0.85[ASN][1000 genomes]
rs377514	0.87[ASN][1000 genomes]
rs380879	0.83[ASN][1000 genomes]
rs389118	0.82[AMR][1000 genomes]
rs406113	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs434112	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs437691	0.81[AMR][1000 genomes]
rs440481	0.85[ASN][1000 genomes]
rs445870	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs448450	0.83[ASN][1000 genomes]
rs451774	0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs454182	0.82[AMR][1000 genomes]
rs4713167	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6456822	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6456823	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6921021	0.88[ASN][1000 genomes]
rs7759252	0.80[ASN][1000 genomes]
rs9468385	0.85[ASN][1000 genomes]
rs974334	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462666	chr6:28417222-28574415	Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv601210	chr6:28417222-28574415	Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv1020689	chr6:28449137-28635171	Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
4	nsv830621	chr6:28473951-28675709	Bivalent/Poised TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28473800-28475600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:28474000-28475400	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr6:28474000-28475400	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr6:28474000-28475600	Enhancers	Primary T cells fromperipheralblood	blood
5	chr6:28474000-28475800	Enhancers	Primary T helper naive cells from peripheral blood	blood
6	chr6:28474000-28475800	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr6:28474000-28475800	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr6:28474200-28475400	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr6:28474400-28475800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr6:28474400-28475800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr6:28474600-28475600	Enhancers	Primary T killer memory cells from peripheral blood	blood
12	chr6:28474600-28475800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
13	chr6:28474800-28475400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr6:28474800-28475600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr6:28474800-28475600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr6:28475000-28475400	Flanking Active TSS	Primary T cells from cord blood	blood
17	chr6:28475200-28475400	Enhancers	iPS-18 Cell Line	embryonic stem cell

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