Variant report

Variant	rs4377598
Chromosome Location	chr4:99670248-99670249
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10007831	0.86[AFR][1000 genomes]
rs11097632	0.86[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs4235430	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6532762	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9998528	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009017	chr4:99669441-100406394	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	57 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:99668000-99670400	Enhancers	Muscle Satellite Cultured Cells	--
2	chr4:99669200-99670400	Weak transcription	Osteobl	bone
3	chr4:99669400-99670400	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr4:99669400-99670600	Weak transcription	Fetal Intestine Large	intestine
5	chr4:99670200-99670800	Enhancers	HSMMtube	muscle
6	chr4:99670200-99671000	Enhancers	Dnd41	blood
7	chr4:99670200-99671000	Enhancers	HSMM	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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