Variant report

Variant	rs4378340
Chromosome Location	chr11:26388695-26388696
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10734374	0.96[EUR][1000 genomes]
rs1585497	0.96[EUR][1000 genomes]
rs2219616	0.91[EUR][1000 genomes]
rs4500442	0.91[EUR][1000 genomes]
rs55740663	0.83[EUR][1000 genomes]
rs57297880	0.83[EUR][1000 genomes]
rs57378086	0.83[EUR][1000 genomes]
rs72876941	0.96[EUR][1000 genomes]
rs72886219	0.83[EUR][1000 genomes]
rs72886220	0.83[EUR][1000 genomes]
rs72886223	0.83[EUR][1000 genomes]
rs72886227	0.83[EUR][1000 genomes]
rs72886232	0.83[EUR][1000 genomes]
rs72886237	0.83[EUR][1000 genomes]
rs72886263	0.83[EUR][1000 genomes]
rs72886276	0.83[EUR][1000 genomes]
rs72886282	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422406	chr11:26329870-26473641	Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26387200-26392600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr11:26387400-26389200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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