Variant report
| Variant | rs72886219 |
|---|---|
| Chromosome Location | chr11:26448934-26448935 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-FIBIN-5 | chr11:26448598-26448959 | NONHSAT018459 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10734374 | 0.87[EUR][1000 genomes] |
| rs1585497 | 0.87[EUR][1000 genomes] |
| rs2219616 | 0.82[EUR][1000 genomes] |
| rs4378340 | 0.83[EUR][1000 genomes] |
| rs4500442 | 0.82[EUR][1000 genomes] |
| rs55701824 | 0.87[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs55740663 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs57297880 | 0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs57378086 | 0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72876941 | 0.87[EUR][1000 genomes] |
| rs72886220 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72886223 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72886227 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72886232 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72886237 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72886255 | 0.94[AFR][1000 genomes] |
| rs72886258 | 0.94[AFR][1000 genomes] |
| rs72886259 | 0.94[AFR][1000 genomes] |
| rs72886261 | 0.94[AFR][1000 genomes] |
| rs72886263 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72886264 | 0.86[AFR][1000 genomes] |
| rs72886276 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72886282 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72889108 | 0.81[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2422406 | chr11:26329870-26473641 | Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:26447200-26463200 | Weak transcription | Foreskin Fibroblast Primary Cells skin01 | Skin |
