Variant report

Variant	rs438730
Chromosome Location	chr8:86426132-86426133
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs1021457	1.00[ASN][1000 genomes]
rs1021458	1.00[ASN][1000 genomes]
rs11777530	1.00[ASN][1000 genomes]
rs11780942	1.00[ASN][1000 genomes]
rs13265202	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13274009	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1389246	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1472200	1.00[ASN][1000 genomes]
rs1493301	1.00[ASN][1000 genomes]
rs17741410	1.00[ASN][1000 genomes]
rs17814075	1.00[ASN][1000 genomes]
rs17814183	1.00[ASN][1000 genomes]
rs17814255	1.00[ASN][1000 genomes]
rs17814594	1.00[ASN][1000 genomes]
rs1979694	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2101706	1.00[ASN][1000 genomes]
rs2201258	1.00[ASN][1000 genomes]
rs2466764	1.00[ASN][1000 genomes]
rs2645050	1.00[ASN][1000 genomes]
rs2725295	1.00[ASN][1000 genomes]
rs359523	1.00[ASN][1000 genomes]
rs359526	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs359527	0.87[EUR][1000 genomes]
rs359530	1.00[ASN][1000 genomes]
rs359536	1.00[ASN][1000 genomes]
rs36054079	1.00[ASN][1000 genomes]
rs370167	1.00[ASN][1000 genomes]
rs384656	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs385064	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs393828	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs395964	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs404123	1.00[CEU][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs406858	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs407320	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs411276	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs413449	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs414354	1.00[ASN][1000 genomes]
rs414922	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs415199	1.00[CEU][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs422914	1.00[ASN][1000 genomes]
rs427285	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs435449	0.94[CEU][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs443177	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs447131	1.00[ASN][1000 genomes]
rs4740052	1.00[ASN][1000 genomes]
rs56698727	1.00[ASN][1000 genomes]
rs62512497	1.00[ASN][1000 genomes]
rs62512498	1.00[ASN][1000 genomes]
rs650498	1.00[ASN][1000 genomes]
rs6605618	1.00[ASN][1000 genomes]
rs6605621	1.00[ASN][1000 genomes]
rs663323	1.00[CEU][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6984702	1.00[ASN][1000 genomes]
rs6990339	1.00[ASN][1000 genomes]
rs6994366	1.00[ASN][1000 genomes]
rs6999266	1.00[ASN][1000 genomes]
rs7823943	1.00[ASN][1000 genomes]
rs7844166	1.00[ASN][1000 genomes]
rs981495	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018483	chr8:86142258-86547831	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv1022463	chr8:86257031-86547831	Enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	esv1804888	chr8:86263098-86986703	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	nsv831377	chr8:86263107-86444141	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv1028148	chr8:86310570-86553130	Flanking Active TSS Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
6	esv2761206	chr8:86310582-86468868	Enhancers Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
7	nsv1023965	chr8:86405135-86452164	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	esv1807380	chr8:86405478-86886412	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
9	esv1829254	chr8:86405478-86886412	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
10	esv1831796	chr8:86405478-86886412	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
11	esv1807498	chr8:86405478-86986703	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
12	esv1828364	chr8:86405478-86986703	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
13	esv1831268	chr8:86405478-86986703	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
14	esv1844000	chr8:86405478-86986703	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
15	esv1851686	chr8:86405478-86986703	ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
16	nsv427824	chr8:86405478-86986703	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
17	esv2758162	chr8:86405478-87055053	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
18	esv2759624	chr8:86405478-87055053	Enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
19	nsv428204	chr8:86405478-87312208	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
20	nsv891122	chr8:86415959-86513414	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:86415600-86427200	Weak transcription	Psoas Muscle	Psoas
2	chr8:86424800-86427400	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr8:86425000-86426600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
4	chr8:86425000-86426600	Enhancers	Brain Substantia Nigra	brain
5	chr8:86425400-86426400	Enhancers	Primary B cells from peripheral blood	blood
6	chr8:86425400-86426600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
7	chr8:86425400-86426600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr8:86425400-86426600	Enhancers	Fetal Heart	heart
9	chr8:86425400-86426800	Enhancers	Dnd41	blood
10	chr8:86425400-86427000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr8:86425400-86427000	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr8:86425400-86427600	Enhancers	Stomach Mucosa	stomach
13	chr8:86425600-86426200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
14	chr8:86425600-86426200	Active TSS	Primary T regulatory cells fromperipheralblood	blood
15	chr8:86425600-86426200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr8:86425600-86426200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr8:86425600-86426200	Flanking Active TSS	Brain Angular Gyrus	brain
18	chr8:86425600-86426200	Active TSS	Ovary	ovary
19	chr8:86425600-86426400	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
20	chr8:86425600-86426400	Flanking Active TSS	Adipose Nuclei	Adipose
21	chr8:86425600-86426400	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
22	chr8:86425600-86426400	Enhancers	Fetal Intestine Small	intestine
23	chr8:86425600-86426400	Flanking Active TSS	Fetal Lung	lung
24	chr8:86425600-86426400	Active TSS	Rectal Mucosa Donor 29	rectum
25	chr8:86425600-86426400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
26	chr8:86425600-86426600	Enhancers	Skeletal Muscle Male	skeletal muscle
27	chr8:86425600-86426600	Enhancers	Small Intestine	intestine
28	chr8:86425600-86426800	Flanking Active TSS	Primary T cells from cord blood	blood
29	chr8:86425600-86426800	Enhancers	Fetal Intestine Large	intestine
30	chr8:86425800-86426200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr8:86425800-86426200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr8:86425800-86426200	Active TSS	Breast Myoepithelial Primary Cells	Breast
33	chr8:86425800-86426200	Active TSS	Primary B cells from cord blood	blood
34	chr8:86425800-86426200	Active TSS	Primary T killer memory cells from peripheral blood	blood
35	chr8:86425800-86426200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr8:86425800-86426200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr8:86425800-86426200	Active TSS	Liver	Liver
38	chr8:86425800-86426200	Active TSS	Brain Anterior Caudate	brain
39	chr8:86425800-86426200	Active TSS	Brain Hippocampus Middle	brain
40	chr8:86425800-86426200	Active TSS	Brain Inferior Temporal Lobe	brain
41	chr8:86425800-86426200	Active TSS	Pancreatic Islets	Pancreatic Islet
42	chr8:86425800-86426200	Active TSS	Rectal Mucosa Donor 31	rectum
43	chr8:86425800-86426400	Flanking Active TSS	Primary hematopoietic stem cells	blood
44	chr8:86425800-86426400	Active TSS	Primary T helper naive cells fromperipheralblood	blood
45	chr8:86425800-86426400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
46	chr8:86425800-86426400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
47	chr8:86425800-86426400	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
48	chr8:86425800-86426400	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
49	chr8:86425800-86426400	Enhancers	Fetal Kidney	kidney
50	chr8:86425800-86426400	Active TSS	Fetal Muscle Leg	muscle

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