Variant report

Variant	rs4387369
Chromosome Location	chr11:75946502-75946503
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:21)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:21 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:75108978..75111821-chr11:75945889..75947812,2	K562	blood:
2	chr11:75946144..75948013-chr11:75988722..75990456,2	K562	blood:
3	chr11:75927881..75933207-chr11:75943670..75948340,7	K562	blood:
4	chr11:75945019..75946541-chr11:75955407..75956936,2	K562	blood:
5	chr11:75945309..75947822-chr11:76155459..76157665,2	K562	blood:
6	chr11:75935715..75937610-chr11:75945904..75948559,2	K562	blood:
7	chr11:75945914..75946639-chr12:72059128..72059638,2	Hela-S3	cervix:
8	chr11:75946355..75947115-chr17:37356506..37357167,2	Hela-S3	cervix:
9	chr11:75945751..75946534-chr21:44816635..44817493,2	Hela-S3	cervix:
10	chr11:75917069..75920655-chr11:75944941..75951028,5	K562	blood:
11	chr11:75945993..75948366-chr11:75966574..75968254,2	MCF-7	breast:
12	chr11:75902153..75903768-chr11:75945033..75947723,2	K562	blood:
13	chr11:75944869..75946615-chr11:76090621..76092208,2	K562	blood:
14	chr11:75917192..75920972-chr11:75944988..75947845,3	K562	blood:
15	chr11:75926036..75928103-chr11:75946320..75948827,2	K562	blood:
16	chr11:75943594..75947518-chr11:75953119..75956215,4	K562	blood:
17	chr11:75944192..75946957-chr11:76002542..76005804,3	K562	blood:
18	chr11:75940558..75942727-chr11:75945927..75947891,2	MCF-7	breast:
19	chr11:75945746..75948974-chr11:75971381..75974996,3	MCF-7	breast:
20	chr11:75945903..75948064-chr11:76494133..76496078,2	K562	blood:
21	chr11:75918273..75920931-chr11:75945404..75947823,5	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000149273	Chromatin interaction
ENSG00000108298	Chromatin interaction
ENSG00000182704	Chromatin interaction
ENSG00000255362	Chromatin interaction
ENSG00000206941	Chromatin interaction
ENSG00000173451	Chromatin interaction
ENSG00000158636	Chromatin interaction
ENSG00000137492	Chromatin interaction
ENSG00000085741	Chromatin interaction
ENSG00000255135	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11236660	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11828100	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12416814	0.86[CEU][hapmap];0.93[CHB][hapmap];0.81[GIH][hapmap];0.83[JPT][hapmap]
rs12421617	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1357120	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1357121	1.00[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2226614	0.92[ASN][1000 genomes]
rs2447947	0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs3920974	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4944093	0.80[ASN][1000 genomes]
rs55770805	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58923489	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59044784	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59048515	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60673125	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61427263	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61894426	0.90[AMR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049039	chr11:75827548-76023665	Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Enhancers Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv897926	chr11:75862571-76004202	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv1037670	chr11:75869435-75956348	Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv1035371	chr11:75869435-75964374	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Enhancers Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
5	nsv1046769	chr11:75869737-75964374	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
6	nsv1040118	chr11:75870189-75995089	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
7	nsv1044894	chr11:75871240-75964374	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
8	nsv1053129	chr11:75871240-75997663	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Active TSS Genic enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75945000-75948200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
2	chr11:75945200-75947800	Active TSS	Brain Inferior Temporal Lobe	brain
3	chr11:75945200-75948000	Active TSS	H9 Cell Line	embryonic stem cell
4	chr11:75945200-75948000	Active TSS	Duodenum Smooth Muscle	Duodenum
5	chr11:75945400-75947600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
6	chr11:75945400-75947600	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
7	chr11:75945400-75947800	Active TSS	Brain Hippocampus Middle	brain
8	chr11:75945400-75947800	Active TSS	Fetal Kidney	kidney
9	chr11:75945400-75947800	Active TSS	Right Atrium	heart
10	chr11:75945400-75948000	Active TSS	ES-I3 Cell Line	embryonic stem cell
11	chr11:75945400-75948000	Active TSS	HUES48 Cell Line	embryonic stem cell
12	chr11:75945400-75948000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr11:75945400-75948000	Active TSS	Brain Angular Gyrus	brain
14	chr11:75945400-75948000	Active TSS	Ovary	ovary
15	chr11:75945600-75946600	Active TSS	Liver	Liver
16	chr11:75945600-75947800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr11:75945600-75947800	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr11:75945600-75947800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr11:75945600-75947800	Active TSS	Aorta	Aorta
20	chr11:75945600-75947800	Active TSS	Brain Anterior Caudate	brain
21	chr11:75945600-75947800	Active TSS	Colon Smooth Muscle	Colon
22	chr11:75945600-75947800	Active TSS	Psoas Muscle	Psoas
23	chr11:75945600-75948000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
24	chr11:75945600-75948000	Active TSS	Breast Myoepithelial Primary Cells	Breast
25	chr11:75945600-75948000	Active TSS	Left Ventricle	heart
26	chr11:75945600-75948200	Flanking Active TSS	Dnd41	blood
27	chr11:75945800-75947200	Bivalent/Poised TSS	Brain Germinal Matrix	brain
28	chr11:75945800-75947600	Active TSS	Fetal Lung	lung
29	chr11:75945800-75947600	Active TSS	Gastric	stomach
30	chr11:75945800-75947600	Active TSS	Small Intestine	intestine
31	chr11:75945800-75947800	Active TSS	HUES6 Cell Line	embryonic stem cell
32	chr11:75945800-75947800	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr11:75945800-75947800	Active TSS	Brain Substantia Nigra	brain
34	chr11:75945800-75947800	Active TSS	Fetal Heart	heart
35	chr11:75945800-75948000	Active TSS	H1 Cell Line	embryonic stem cell
36	chr11:75945800-75948000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr11:75945800-75948000	Active TSS	HUES64 Cell Line	embryonic stem cell
38	chr11:75945800-75948000	Active TSS	iPS-15b Cell Line	embryonic stem cell
39	chr11:75945800-75948000	Active TSS	iPS-18 Cell Line	embryonic stem cell
40	chr11:75945800-75948000	Active TSS	Brain Cingulate Gyrus	brain
41	chr11:75945800-75948000	Active TSS	Fetal Brain Male	brain
42	chr11:75945800-75948000	Active TSS	Pancreatic Islets	Pancreatic Islet
43	chr11:75945800-75948200	Active TSS	iPS-20b Cell Line	embryonic stem cell
44	chr11:75946000-75946600	Active TSS	Stomach Smooth Muscle	stomach
45	chr11:75946000-75947000	Active TSS	Primary T regulatory cells fromperipheralblood	blood
46	chr11:75946000-75947000	Active TSS	Fetal Muscle Trunk	muscle
47	chr11:75946000-75947000	Active TSS	Thymus	Thymus
48	chr11:75946000-75947200	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
49	chr11:75946000-75947200	Active TSS	Lung	lung
50	chr11:75946000-75947200	Active TSS	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links