Variant report

Variant	rs61894426
Chromosome Location	chr11:75946166-75946167
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:25)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:25 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:75945247..75946222-chr3:185655258..185656104,2	Hela-S3	cervix:
2	chr11:75108978..75111821-chr11:75945889..75947812,2	K562	blood:
3	chr11:75946144..75948013-chr11:75988722..75990456,2	K562	blood:
4	chr11:75927881..75933207-chr11:75943670..75948340,7	K562	blood:
5	chr11:75945019..75946541-chr11:75955407..75956936,2	K562	blood:
6	chr11:75945309..75947822-chr11:76155459..76157665,2	K562	blood:
7	chr1:45204918..45205418-chr11:75945782..75946374,2	NB4	blood:
8	chr11:75935715..75937610-chr11:75945904..75948559,2	K562	blood:
9	chr11:75945914..75946639-chr12:72059128..72059638,2	Hela-S3	cervix:
10	chr11:75945751..75946534-chr21:44816635..44817493,2	Hela-S3	cervix:
11	chr11:75917069..75920655-chr11:75944941..75951028,5	K562	blood:
12	chr11:75945993..75948366-chr11:75966574..75968254,2	MCF-7	breast:
13	chr11:75944645..75946469-chr11:76092568..76094485,2	K562	blood:
14	chr11:75945886..75946393-chr17:37886241..37886873,2	Hela-S3	cervix:
15	chr11:75902153..75903768-chr11:75945033..75947723,2	K562	blood:
16	chr11:75944869..75946615-chr11:76090621..76092208,2	K562	blood:
17	chr11:75917192..75920972-chr11:75944988..75947845,3	K562	blood:
18	chr11:75943594..75947518-chr11:75953119..75956215,4	K562	blood:
19	chr11:75945612..75946338-chr16:67062827..67063425,2	Hela-S3	cervix:
20	chr11:75944192..75946957-chr11:76002542..76005804,3	K562	blood:
21	chr11:68039514..68040504-chr11:75945798..75946413,2	Hela-S3	cervix:
22	chr11:75940558..75942727-chr11:75945927..75947891,2	MCF-7	breast:
23	chr11:75945746..75948974-chr11:75971381..75974996,3	MCF-7	breast:
24	chr11:75945903..75948064-chr11:76494133..76496078,2	K562	blood:
25	chr11:75918273..75920931-chr11:75945404..75947823,5	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000067955	Chromatin interaction
ENSG00000085741	Chromatin interaction
ENSG00000158636	Chromatin interaction
ENSG00000149273	Chromatin interaction
ENSG00000137492	Chromatin interaction
ENSG00000136527	Chromatin interaction
ENSG00000179240	Chromatin interaction
ENSG00000141741	Chromatin interaction
ENSG00000255135	Chromatin interaction
ENSG00000206941	Chromatin interaction
ENSG00000182704	Chromatin interaction
ENSG00000173451	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11236660	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11828100	0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12416814	0.83[EUR][1000 genomes]
rs12421617	0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1357120	0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1357121	0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2226614	0.94[ASN][1000 genomes]
rs3920974	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4387369	0.90[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs55770805	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs58923489	0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs59044784	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs59048515	0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs60673125	0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs61427263	0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049039	chr11:75827548-76023665	Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Enhancers Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv897926	chr11:75862571-76004202	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv1037670	chr11:75869435-75956348	Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv1035371	chr11:75869435-75964374	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Enhancers Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
5	nsv1046769	chr11:75869737-75964374	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
6	nsv1040118	chr11:75870189-75995089	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
7	nsv1044894	chr11:75871240-75964374	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
8	nsv1053129	chr11:75871240-75997663	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Active TSS Genic enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75944400-75946200	Flanking Active TSS	Hela-S3	cervix
2	chr11:75944400-75946400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
3	chr11:75945000-75946400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
4	chr11:75945000-75948200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
5	chr11:75945200-75946200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr11:75945200-75946200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr11:75945200-75946200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
8	chr11:75945200-75946200	Flanking Active TSS	Adipose Nuclei	Adipose
9	chr11:75945200-75946200	Flanking Active TSS	Fetal Intestine Small	intestine
10	chr11:75945200-75946200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
11	chr11:75945200-75946200	Flanking Active TSS	Osteobl	bone
12	chr11:75945200-75946400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
13	chr11:75945200-75946400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr11:75945200-75947800	Active TSS	Brain Inferior Temporal Lobe	brain
15	chr11:75945200-75948000	Active TSS	H9 Cell Line	embryonic stem cell
16	chr11:75945200-75948000	Active TSS	Duodenum Smooth Muscle	Duodenum
17	chr11:75945400-75946200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr11:75945400-75946200	Flanking Active TSS	Primary B cells from peripheral blood	blood
19	chr11:75945400-75946200	Flanking Active TSS	Duodenum Mucosa	Duodenum
20	chr11:75945400-75946200	Flanking Active TSS	Placenta	Placenta
21	chr11:75945400-75946200	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
22	chr11:75945400-75946200	Flanking Active TSS	GM12878-XiMat	blood
23	chr11:75945400-75946200	Flanking Active TSS	K562	blood
24	chr11:75945400-75946400	Flanking Active TSS	Primary B cells from cord blood	blood
25	chr11:75945400-75946400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr11:75945400-75947600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
27	chr11:75945400-75947600	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
28	chr11:75945400-75947800	Active TSS	Brain Hippocampus Middle	brain
29	chr11:75945400-75947800	Active TSS	Fetal Kidney	kidney
30	chr11:75945400-75947800	Active TSS	Right Atrium	heart
31	chr11:75945400-75948000	Active TSS	ES-I3 Cell Line	embryonic stem cell
32	chr11:75945400-75948000	Active TSS	HUES48 Cell Line	embryonic stem cell
33	chr11:75945400-75948000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr11:75945400-75948000	Active TSS	Brain Angular Gyrus	brain
35	chr11:75945400-75948000	Active TSS	Ovary	ovary
36	chr11:75945600-75946200	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr11:75945600-75946200	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr11:75945600-75946200	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
39	chr11:75945600-75946200	Flanking Active TSS	Primary T cells from cord blood	blood
40	chr11:75945600-75946200	Flanking Active TSS	Primary hematopoietic stem cells	blood
41	chr11:75945600-75946200	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
42	chr11:75945600-75946200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
43	chr11:75945600-75946200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
44	chr11:75945600-75946200	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr11:75945600-75946200	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
46	chr11:75945600-75946200	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
47	chr11:75945600-75946200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
48	chr11:75945600-75946200	Flanking Active TSS	Fetal Thymus	thymus
49	chr11:75945600-75946200	Flanking Active TSS	HMEC	breast
50	chr11:75945600-75946200	Flanking Active TSS	HUVEC	blood vessel

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