Variant report

Variant	rs4389441
Chromosome Location	chr3:139437687-139437688
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:139437070..139437910-chr3:139653098..139654016,8	MCF-7	breast:
2	chr3:139437002..139437900-chr3:139652880..139654338,15	MCF-7	breast:
3	chr3:139436698..139437886-chr3:139769877..139770897,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000158258	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11917185	1.00[EUR][1000 genomes]
rs1374827	0.83[EUR][1000 genomes]
rs4082117	0.84[EUR][1000 genomes]
rs4234473	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4234474	1.00[EUR][1000 genomes]
rs4234475	1.00[EUR][1000 genomes]
rs4261836	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4267617	0.91[EUR][1000 genomes]
rs4683671	1.00[EUR][1000 genomes]
rs4683682	1.00[EUR][1000 genomes]
rs4683687	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6788842	1.00[EUR][1000 genomes]
rs6793000	1.00[EUR][1000 genomes]
rs6794429	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6800545	1.00[EUR][1000 genomes]
rs6805798	0.91[EUR][1000 genomes]
rs9838576	0.85[EUR][1000 genomes]
rs9843472	0.84[EUR][1000 genomes]
rs9863263	0.85[EUR][1000 genomes]
rs9869310	0.91[EUR][1000 genomes]
rs9876670	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003154	chr3:139060841-139788752	ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv536729	chr3:139060841-139788752	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv916193	chr3:139187767-139821526	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv530058	chr3:139243971-139814419	Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv460865	chr3:139411031-139455326	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv591857	chr3:139411031-139455326	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:139434600-139437800	Enhancers	HSMMtube	muscle
2	chr3:139435400-139437800	Enhancers	Fetal Stomach	stomach
3	chr3:139436400-139437800	Enhancers	Fetal Brain Female	brain
4	chr3:139437200-139437800	Enhancers	H1 Cell Line	embryonic stem cell
5	chr3:139437200-139437800	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr3:139437200-139437800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr3:139437200-139437800	Enhancers	Fetal Muscle Trunk	muscle
8	chr3:139437400-139437800	Weak transcription	Ovary	ovary
9	chr3:139437400-139440000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr3:139437600-139437800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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