Variant report

Variant	rs9869310
Chromosome Location	chr3:139464500-139464501
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:139463769..139465328-chr3:139564978..139566656,2	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11917185	0.91[EUR][1000 genomes]
rs1374827	0.87[EUR][1000 genomes]
rs16849275	0.91[GIH][hapmap]
rs188417	0.82[GIH][hapmap]
rs4082117	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4234474	0.91[EUR][1000 genomes]
rs4234475	0.91[EUR][1000 genomes]
rs4261836	0.93[EUR][1000 genomes]
rs4267617	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4389441	0.91[EUR][1000 genomes]
rs4683671	0.91[EUR][1000 genomes]
rs4683682	0.91[EUR][1000 genomes]
rs4683687	1.00[EUR][1000 genomes]
rs5024967	0.86[EUR][1000 genomes]
rs6774120	0.82[EUR][1000 genomes]
rs6782727	1.00[MEX][hapmap]
rs6788842	0.91[EUR][1000 genomes]
rs6793000	0.91[EUR][1000 genomes]
rs6794429	1.00[EUR][1000 genomes]
rs6800545	0.91[EUR][1000 genomes]
rs6805798	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7631422	0.91[GIH][hapmap];1.00[MEX][hapmap]
rs9838576	0.89[EUR][1000 genomes]
rs9843472	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9863263	0.89[EUR][1000 genomes]
rs9876670	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003154	chr3:139060841-139788752	ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv536729	chr3:139060841-139788752	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv916193	chr3:139187767-139821526	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv530058	chr3:139243971-139814419	Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	esv3326084	chr3:139461662-139465960	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:139461200-139464600	Weak transcription	Fetal Heart	heart
2	chr3:139463600-139465800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:139464000-139465000	Enhancers	Fetal Lung	lung
4	chr3:139464200-139464800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr3:139464200-139464800	Enhancers	NHLF	lung
6	chr3:139464200-139465000	Enhancers	Ovary	ovary
7	chr3:139464200-139465200	Enhancers	NH-A	brain
8	chr3:139464200-139466000	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr3:139464400-139465000	Enhancers	HepG2	liver

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