Variant report
| Variant | rs4392660 |
|---|---|
| Chromosome Location | chr5:90546671-90546672 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr5:90539006..90540710-chr5:90545437..90546997,2 | K562 | blood: | |
| 2 | chr5:90527291..90547553-chr5:90674171..90681359,33 | K562 | blood: | |
| 3 | chr5:90546059..90547829-chr5:90662674..90664478,2 | K562 | blood: | |
| 4 | chr5:90540304..90543080-chr5:90544867..90547195,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000113369 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:16)
| rs_ID | r2[population] |
|---|---|
| rs10059932 | 0.83[EUR][1000 genomes] |
| rs10473941 | 0.83[EUR][1000 genomes] |
| rs10473942 | 0.83[EUR][1000 genomes] |
| rs13362365 | 0.80[EUR][1000 genomes] |
| rs28379688 | 0.80[EUR][1000 genomes] |
| rs28490868 | 0.83[EUR][1000 genomes] |
| rs2973471 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs55657470 | 0.83[EUR][1000 genomes] |
| rs55818598 | 0.80[EUR][1000 genomes] |
| rs55989779 | 0.83[EUR][1000 genomes] |
| rs56410910 | 0.80[EUR][1000 genomes] |
| rs57891485 | 0.83[EUR][1000 genomes] |
| rs58520625 | 0.80[EUR][1000 genomes] |
| rs59967608 | 0.80[EUR][1000 genomes] |
| rs73773334 | 0.80[EUR][1000 genomes] |
| rs73773337 | 0.83[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1024813 | chr5:90321535-90870739 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 84 gene(s) | inside rSNPs | diseases |
| 2 | nsv537806 | chr5:90321535-90870739 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 84 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
