Variant report
| Variant | rs2973471 |
|---|---|
| Chromosome Location | chr5:90543969-90543970 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000113369 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10059932 | 0.83[EUR][1000 genomes] |
| rs10473941 | 0.83[EUR][1000 genomes] |
| rs10473942 | 0.83[EUR][1000 genomes] |
| rs13362365 | 0.80[EUR][1000 genomes] |
| rs1473048 | 1.00[ASN][1000 genomes] |
| rs2102553 | 1.00[ASN][1000 genomes] |
| rs28379688 | 0.80[EUR][1000 genomes] |
| rs28490868 | 0.83[EUR][1000 genomes] |
| rs2941889 | 1.00[ASN][1000 genomes] |
| rs2941903 | 1.00[ASN][1000 genomes] |
| rs2973465 | 1.00[ASN][1000 genomes] |
| rs4392660 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs55657470 | 0.83[EUR][1000 genomes] |
| rs55818598 | 0.80[EUR][1000 genomes] |
| rs55989779 | 0.83[EUR][1000 genomes] |
| rs56410910 | 0.80[EUR][1000 genomes] |
| rs57891485 | 0.83[EUR][1000 genomes] |
| rs58520625 | 0.80[EUR][1000 genomes] |
| rs59967608 | 0.80[EUR][1000 genomes] |
| rs6884883 | 1.00[ASN][1000 genomes] |
| rs73179864 | 1.00[ASN][1000 genomes] |
| rs73773334 | 0.80[EUR][1000 genomes] |
| rs73773337 | 0.83[EUR][1000 genomes] |
| rs995691 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1024813 | chr5:90321535-90870739 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 84 gene(s) | inside rSNPs | diseases |
| 2 | nsv537806 | chr5:90321535-90870739 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 84 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
