Variant report

Variant	rs6884883
Chromosome Location	chr5:90612428-90612429
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1473048	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2102553	1.00[ASN][1000 genomes]
rs2137010	1.00[CHB][hapmap]
rs2941889	1.00[ASN][1000 genomes]
rs2941903	1.00[ASN][1000 genomes]
rs2973465	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2973471	1.00[ASN][1000 genomes]
rs73179864	1.00[ASN][1000 genomes]
rs867831	1.00[CHB][hapmap]
rs995691	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024813	chr5:90321535-90870739	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
2	nsv537806	chr5:90321535-90870739	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:90610200-90612800	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr5:90610400-90612600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr5:90610600-90614400	Weak transcription	HSMMtube	muscle
4	chr5:90611200-90612600	Enhancers	Primary B cells from peripheral blood	blood
5	chr5:90611200-90612800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr5:90611200-90612800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr5:90611200-90614200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr5:90611200-90614400	Weak transcription	Fetal Thymus	thymus
9	chr5:90611400-90612600	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr5:90611600-90612800	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr5:90612200-90612800	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr5:90612400-90613600	Enhancers	A549	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links