Variant report

Variant	rs2102553
Chromosome Location	chr5:90580608-90580609
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1473048	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2941889	1.00[ASN][1000 genomes]
rs2941903	1.00[ASN][1000 genomes]
rs2973465	1.00[ASN][1000 genomes]
rs2973471	1.00[ASN][1000 genomes]
rs6884883	1.00[ASN][1000 genomes]
rs73179864	1.00[ASN][1000 genomes]
rs995691	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024813	chr5:90321535-90870739	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
2	nsv537806	chr5:90321535-90870739	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:90576800-90583800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:90577400-90580800	Enhancers	Hela-S3	cervix
3	chr5:90577400-90581000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr5:90577600-90583800	Weak transcription	Rectal Smooth Muscle	rectum
5	chr5:90577800-90583800	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr5:90579800-90584800	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr5:90580000-90583800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr5:90580200-90584800	Weak transcription	Small Intestine	intestine
9	chr5:90580400-90583800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr5:90580400-90583800	Weak transcription	Colon Smooth Muscle	Colon
11	chr5:90580400-90587200	Weak transcription	Primary neutrophils fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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