Variant report

Variant	rs4394756
Chromosome Location	chr10:59417078-59417079
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:59098621..59099527-chr10:59416327..59417352,4	MCF-7	breast:
2	chr10:59098744..59099488-chr10:59416761..59417512,2	MCF-7	breast:
3	chr10:59339470..59340339-chr10:59416624..59417445,2	MCF-7	breast:
4	chr10:59417068..59417632-chr10:59824796..59825595,2	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11591507	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11592162	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11597183	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11597214	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11597937	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11599559	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12763175	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12764596	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12782480	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17623002	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17623048	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17623072	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34062217	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34928064	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35117593	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35350498	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4259760	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4313499	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4512754	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4619073	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6481307	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67660705	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67725653	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72799967	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72799968	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72799969	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7474675	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7905195	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054968	chr10:59165968-59426800	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv895550	chr10:59217371-59537773	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv895552	chr10:59373302-59472580	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv895553	chr10:59374867-59585586	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:59413400-59417200	Weak transcription	Brain Germinal Matrix	brain

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