Variant report

Variant	rs12782480
Chromosome Location	chr10:59391776-59391777
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs11591507	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11592162	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11597183	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11597214	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11597937	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11598698	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11599559	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12763175	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12764490	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12764596	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12764876	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12769867	0.82[EUR][1000 genomes]
rs12771957	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12772137	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12775659	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12777405	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17623002	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17623048	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17623072	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17695974	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34062217	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34264301	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34308501	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34909447	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34928064	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35117593	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35350498	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35423260	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35486843	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs36059963	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4259760	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4313499	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4394756	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4512754	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4619073	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6481307	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67276446	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs67660705	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67725653	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67920047	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72799967	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72799968	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72799969	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801213	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72801217	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72801218	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7474675	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7905195	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054968	chr10:59165968-59426800	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv467288	chr10:59189178-59394044	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv551122	chr10:59189178-59394044	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv895550	chr10:59217371-59537773	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv895552	chr10:59373302-59472580	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv895553	chr10:59374867-59585586	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:59389600-59392000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr10:59389800-59392000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr10:59390600-59397000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr10:59390800-59391800	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr10:59390800-59392000	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr10:59390800-59392200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr10:59391600-59392400	Enhancers	HUES48 Cell Line	embryonic stem cell

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