Variant report

Variant	rs12769867
Chromosome Location	chr10:59384825-59384826
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:59383697..59386334-chr10:59392367..59395214,2	MCF-7	breast:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11005865	1.00[ASN][1000 genomes]
rs11591507	0.82[EUR][1000 genomes]
rs11592162	0.83[EUR][1000 genomes]
rs11597183	0.82[EUR][1000 genomes]
rs11597214	0.82[EUR][1000 genomes]
rs11597937	0.81[EUR][1000 genomes]
rs11598698	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11599559	0.82[EUR][1000 genomes]
rs12253773	1.00[ASN][1000 genomes]
rs12763175	0.82[EUR][1000 genomes]
rs12764490	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12764596	0.81[EUR][1000 genomes]
rs12764876	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12771957	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12772137	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12775659	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12777405	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12782480	0.82[EUR][1000 genomes]
rs17623002	0.82[EUR][1000 genomes]
rs17623048	0.81[EUR][1000 genomes]
rs17623072	0.81[EUR][1000 genomes]
rs17695974	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34062217	0.82[EUR][1000 genomes]
rs34264301	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34308501	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34909447	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34928064	0.82[EUR][1000 genomes]
rs35117593	0.81[EUR][1000 genomes]
rs35350498	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35423260	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35486843	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36059963	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67276446	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67660705	0.81[EUR][1000 genomes]
rs67920047	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72799967	0.81[EUR][1000 genomes]
rs72799968	0.83[AMR][1000 genomes]
rs72799969	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72801213	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801217	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801218	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054968	chr10:59165968-59426800	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv467288	chr10:59189178-59394044	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv551122	chr10:59189178-59394044	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv895550	chr10:59217371-59537773	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv895552	chr10:59373302-59472580	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv895553	chr10:59374867-59585586	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:59383600-59385200	Enhancers	HMEC	breast
2	chr10:59383600-59385200	Enhancers	NHEK	skin
3	chr10:59383600-59385400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr10:59383600-59387600	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr10:59384200-59385200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr10:59384800-59385200	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr10:59384800-59385800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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