Variant report

Variant	rs36059963
Chromosome Location	chr10:59385421-59385422
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:59383697..59386334-chr10:59392367..59395214,2	MCF-7	breast:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11005865	1.00[ASN][1000 genomes]
rs11591507	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11592162	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11597183	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11597214	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11597937	0.81[EUR][1000 genomes]
rs11598698	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11599559	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12253773	1.00[ASN][1000 genomes]
rs12763175	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12764490	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12764596	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12764876	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12769867	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12771957	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12772137	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12775659	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12777405	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12782480	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17623002	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17623048	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17623072	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17695974	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34062217	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34264301	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34308501	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34909447	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34928064	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35117593	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35350498	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35423260	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35486843	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4259760	0.80[AMR][1000 genomes]
rs6481307	0.82[AMR][1000 genomes]
rs67276446	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67660705	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs67920047	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72799967	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72799968	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs72799969	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72801213	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801217	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801218	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054968	chr10:59165968-59426800	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv467288	chr10:59189178-59394044	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv551122	chr10:59189178-59394044	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv895550	chr10:59217371-59537773	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv895552	chr10:59373302-59472580	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv895553	chr10:59374867-59585586	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:59383600-59387600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr10:59384800-59385800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr10:59385000-59385600	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr10:59385000-59386000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr10:59385000-59386800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr10:59385200-59385600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr10:59385200-59386200	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr10:59385200-59386200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr10:59385200-59387000	Weak transcription	iPS-20b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links