Variant report

Variant	rs12253773
Chromosome Location	chr10:59342165-59342166
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11005865	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11598698	1.00[ASN][1000 genomes]
rs12764490	1.00[ASN][1000 genomes]
rs12769867	1.00[ASN][1000 genomes]
rs12771957	1.00[ASN][1000 genomes]
rs12772137	1.00[ASN][1000 genomes]
rs12775659	1.00[ASN][1000 genomes]
rs12777405	1.00[ASN][1000 genomes]
rs17695974	1.00[ASN][1000 genomes]
rs34264301	1.00[ASN][1000 genomes]
rs34308501	1.00[ASN][1000 genomes]
rs34909447	1.00[ASN][1000 genomes]
rs35423260	1.00[ASN][1000 genomes]
rs35486843	1.00[ASN][1000 genomes]
rs36059963	1.00[ASN][1000 genomes]
rs67276446	1.00[ASN][1000 genomes]
rs67920047	1.00[ASN][1000 genomes]
rs72801213	1.00[ASN][1000 genomes]
rs72801217	1.00[ASN][1000 genomes]
rs72801218	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054968	chr10:59165968-59426800	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv467288	chr10:59189178-59394044	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv551122	chr10:59189178-59394044	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1053689	chr10:59200246-59366941	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv540653	chr10:59200246-59366941	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv895550	chr10:59217371-59537773	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1052321	chr10:59262857-59352442	ZNF genes & repeats Weak transcription Enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv1043592	chr10:59262857-59352758	ZNF genes & repeats Weak transcription Enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv895551	chr10:59272564-59363195	Weak transcription Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:59341400-59342800	Weak transcription	Pancreatic Islets	Pancreatic Islet

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