Variant report

Variant	rs12771957
Chromosome Location	chr10:59387933-59387934
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11005865	1.00[ASN][1000 genomes]
rs11591507	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11592162	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11597183	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11597214	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11597937	0.81[EUR][1000 genomes]
rs11598698	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11599559	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12253773	1.00[ASN][1000 genomes]
rs12763175	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12764490	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12764596	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12764876	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12769867	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12772137	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12775659	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12777405	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12782480	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17623002	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17623048	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17623072	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17695974	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34062217	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34264301	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34308501	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34909447	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34928064	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35117593	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35350498	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35423260	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35486843	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36059963	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4259760	0.80[AMR][1000 genomes]
rs6481307	0.82[AMR][1000 genomes]
rs67276446	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67660705	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs67920047	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72799967	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72799968	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs72799969	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72801213	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801217	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72801218	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054968	chr10:59165968-59426800	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv467288	chr10:59189178-59394044	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv551122	chr10:59189178-59394044	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv895550	chr10:59217371-59537773	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv895552	chr10:59373302-59472580	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv895553	chr10:59374867-59585586	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3342064	chr10:59387874-59388195	Enhancers Flanking Active TSS Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:59386000-59388000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr10:59386000-59388000	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr10:59386200-59388000	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr10:59386800-59388600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr10:59387000-59388000	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr10:59387000-59389000	Enhancers	Brain Germinal Matrix	brain
7	chr10:59387400-59388400	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
8	chr10:59387400-59388400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr10:59387400-59389000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr10:59387400-59389000	Enhancers	Liver	Liver
11	chr10:59387400-59389400	Enhancers	Fetal Intestine Large	intestine
12	chr10:59387600-59388000	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr10:59387600-59388200	Active TSS	ES-I3 Cell Line	embryonic stem cell
14	chr10:59387600-59388400	Enhancers	Fetal Kidney	kidney
15	chr10:59387600-59388800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr10:59387600-59388800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr10:59387600-59388800	Enhancers	Placenta Amnion	Placenta Amnion
18	chr10:59387600-59389000	Enhancers	Cortex derived primary cultured neurospheres	brain
19	chr10:59387600-59389200	Enhancers	Pancreatic Islets	Pancreatic Islet
20	chr10:59387800-59388400	Enhancers	HepG2	liver
21	chr10:59387800-59388600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr10:59387800-59388600	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
23	chr10:59387800-59389000	Enhancers	Fetal Intestine Small	intestine

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