Variant report

Variant	rs4397906
Chromosome Location	chr12:62264391-62264392
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1031579	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1031580	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1031581	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1031582	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1031583	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10735896	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10735897	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10735898	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10784270	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10784271	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1869893	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2359979	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2359980	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3759287	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3759289	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4427611	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7965257	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7980597	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039741	chr12:62046850-62491052	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:62261600-62266000	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr12:62262200-62264600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr12:62263400-62264600	Enhancers	Adipose Nuclei	Adipose
4	chr12:62263400-62265600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
5	chr12:62263600-62264800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr12:62263600-62265000	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr12:62263600-62265400	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr12:62263600-62266000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
9	chr12:62263600-62266000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr12:62263600-62266200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr12:62263800-62265200	Enhancers	Primary hematopoietic stem cells	blood
12	chr12:62264000-62264800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chr12:62264000-62265600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
14	chr12:62264200-62264800	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr12:62264200-62265400	Enhancers	Primary T helper naive cells from peripheral blood	blood
16	chr12:62264200-62265600	Enhancers	Primary T helper cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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