Variant report

Variant	rs1869893
Chromosome Location	chr12:62262577-62262578
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1031579	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1031580	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1031581	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1031582	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1031583	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10735896	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10735897	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10735898	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10784264	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10784270	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10784271	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2359979	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2359980	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2360681	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3759287	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3759289	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4397906	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4427611	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6581426	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7959668	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7960162	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7965257	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7980597	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs973121	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039741	chr12:62046850-62491052	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:62252200-62263600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr12:62257800-62263400	Weak transcription	Adipose Nuclei	Adipose
3	chr12:62257800-62263600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr12:62261600-62266000	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr12:62262200-62264600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr12:62262400-62263400	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr12:62262400-62263600	Weak transcription	Primary monocytes fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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