Variant report

Variant	rs2360681
Chromosome Location	chr12:62190788-62190789
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:62190203..62192695-chr12:62192926..62194632,2	MCF-7	breast:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1031579	0.80[MEX][hapmap]
rs10747941	0.82[EUR][1000 genomes]
rs10747942	0.82[EUR][1000 genomes]
rs10784252	0.92[CEU][hapmap];0.86[MEX][hapmap];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10784263	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10784264	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10877716	0.82[EUR][1000 genomes]
rs1395489	0.92[CEU][hapmap]
rs1395492	0.81[EUR][1000 genomes]
rs1506847	0.82[EUR][1000 genomes]
rs1506848	0.85[EUR][1000 genomes]
rs1605325	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1869893	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1911247	0.82[EUR][1000 genomes]
rs2168452	0.85[CEU][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2198779	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2360682	0.82[EUR][1000 genomes]
rs4310677	0.82[EUR][1000 genomes]
rs6581415	0.81[EUR][1000 genomes]
rs6581416	0.82[EUR][1000 genomes]
rs6581418	0.92[CEU][hapmap];1.00[MEX][hapmap];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6581419	0.83[EUR][1000 genomes]
rs6581426	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6581430	0.92[CEU][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6581431	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6581432	1.00[CEU][hapmap]
rs7135492	0.81[EUR][1000 genomes]
rs7137928	0.82[EUR][1000 genomes]
rs7297180	0.82[EUR][1000 genomes]
rs7301397	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7303770	0.82[EUR][1000 genomes]
rs7306730	0.82[EUR][1000 genomes]
rs7314715	0.81[EUR][1000 genomes]
rs7398155	0.92[CEU][hapmap];1.00[MEX][hapmap];0.82[EUR][1000 genomes]
rs7487386	0.84[CEU][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7488724	0.82[EUR][1000 genomes]
rs7954202	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7957259	0.91[CEU][hapmap];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7959668	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7960162	1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs7964077	0.81[EUR][1000 genomes]
rs7974958	0.83[CEU][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7977950	0.85[CEU][hapmap];0.86[MEX][hapmap];0.91[TSI][hapmap]
rs973121	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs9783426	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042044	chr12:61256015-62196885	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1039741	chr12:62046850-62491052	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv899151	chr12:62108648-62227606	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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