Variant report

Variant	rs6581426
Chromosome Location	chr12:62145760-62145761
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10747941	0.90[EUR][1000 genomes]
rs10747942	0.90[EUR][1000 genomes]
rs10784252	0.83[CEU][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10784263	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10784264	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10877716	0.90[EUR][1000 genomes]
rs1354787	0.87[EUR][1000 genomes]
rs1395489	0.83[CEU][hapmap];0.86[EUR][1000 genomes]
rs1395492	0.89[EUR][1000 genomes]
rs1395494	0.87[EUR][1000 genomes]
rs1506847	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1506848	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1605325	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1869893	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1911247	0.90[EUR][1000 genomes]
rs1983133	0.85[EUR][1000 genomes]
rs2168452	0.93[CEU][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2198779	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2360681	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2360682	0.90[EUR][1000 genomes]
rs4310677	0.90[EUR][1000 genomes]
rs4495952	0.83[EUR][1000 genomes]
rs6581408	0.87[EUR][1000 genomes]
rs6581415	0.89[EUR][1000 genomes]
rs6581416	0.90[EUR][1000 genomes]
rs6581418	0.83[CEU][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6581419	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6581430	0.83[CEU][hapmap];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6581431	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6581432	1.00[CEU][hapmap]
rs7135492	0.89[EUR][1000 genomes]
rs7136512	0.87[EUR][1000 genomes]
rs7137928	0.90[EUR][1000 genomes]
rs7297180	0.90[EUR][1000 genomes]
rs7301397	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7303770	0.90[EUR][1000 genomes]
rs7306730	0.90[EUR][1000 genomes]
rs7314715	0.88[EUR][1000 genomes]
rs7398155	0.83[CEU][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7487386	0.93[CEU][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7488724	0.90[EUR][1000 genomes]
rs7954202	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7957259	0.92[CEU][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7959668	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7960162	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7964077	0.89[EUR][1000 genomes]
rs7974958	0.92[CEU][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7977950	0.92[CEU][hapmap]
rs973121	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9783426	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042044	chr12:61256015-62196885	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1039741	chr12:62046850-62491052	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv899151	chr12:62108648-62227606	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv826402	chr12:62116803-62178453	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv826403	chr12:62130037-62190482	ZNF genes & repeats Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1040154	chr12:62145382-62176964	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:62140400-62147200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr12:62140800-62149200	Weak transcription	Ovary	ovary
3	chr12:62143800-62146000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr12:62144400-62146800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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