Variant report
| Variant | rs10784263 |
|---|---|
| Chromosome Location | chr12:62201124-62201125 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr12:62199096..62201895-chr12:62204171..62205825,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs10747941 | 0.80[EUR][1000 genomes] |
| rs10747942 | 0.80[EUR][1000 genomes] |
| rs10784252 | 0.80[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs10877716 | 0.80[EUR][1000 genomes] |
| rs1506847 | 0.80[EUR][1000 genomes] |
| rs1506848 | 0.83[EUR][1000 genomes] |
| rs1605325 | 0.81[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs1911247 | 0.80[EUR][1000 genomes] |
| rs2168452 | 0.96[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs2198779 | 0.96[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs2360682 | 0.80[EUR][1000 genomes] |
| rs4310677 | 0.80[EUR][1000 genomes] |
| rs6581416 | 0.80[EUR][1000 genomes] |
| rs6581418 | 0.80[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs6581419 | 0.81[EUR][1000 genomes] |
| rs6581426 | 0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6581430 | 0.92[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs6581431 | 0.96[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs7137928 | 0.80[EUR][1000 genomes] |
| rs7297180 | 0.80[EUR][1000 genomes] |
| rs7301397 | 0.84[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs7303770 | 0.80[EUR][1000 genomes] |
| rs7306730 | 0.80[EUR][1000 genomes] |
| rs7398155 | 0.80[EUR][1000 genomes] |
| rs7487386 | 0.90[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs7488724 | 0.80[EUR][1000 genomes] |
| rs7954202 | 0.80[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs7957259 | 0.80[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs7974958 | 0.90[AMR][1000 genomes];0.86[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1039741 | chr12:62046850-62491052 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv899151 | chr12:62108648-62227606 | Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv977138 | chr12:62199079-62211306 | Weak transcription ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | esv11147 | chr12:62199825-62210977 | ZNF genes & repeats Weak transcription | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 5 | esv3497041 | chr12:62200665-62211108 | ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 6 | esv3497052 | chr12:62200665-62211108 | ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:62199800-62203000 | ZNF genes & repeats | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
| 2 | chr12:62200600-62201800 | ZNF genes & repeats | ES-UCSF4 Cell Line | embryonic stem cell |
