Variant report

Variant	rs2168452
Chromosome Location	chr12:62199422-62199423
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:62198235..62200849-chr19:59029666..59031428,2	MCF-7	breast:
2	chr12:62199096..62201895-chr12:62204171..62205825,2	K562	blood:

Variant related genes	Relation type
ENSG00000119574	Chromatin interaction

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs1031579	0.92[CHB][hapmap];0.85[JPT][hapmap]
rs1031581	0.93[CHB][hapmap];0.85[JPT][hapmap]
rs1031582	0.93[CHB][hapmap];0.85[JPT][hapmap]
rs1031583	0.85[CHB][hapmap];0.85[JPT][hapmap]
rs10735896	0.93[CHB][hapmap];0.85[JPT][hapmap];0.80[ASN][1000 genomes]
rs10735897	0.93[CHB][hapmap];0.85[JPT][hapmap];0.80[ASN][1000 genomes]
rs10735898	0.82[JPT][hapmap]
rs10747941	0.83[EUR][1000 genomes]
rs10747942	0.83[EUR][1000 genomes]
rs10784252	0.92[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10784263	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10784264	0.93[CEU][hapmap]
rs10784270	0.92[CHB][hapmap];0.84[JPT][hapmap]
rs10784271	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs10877716	0.83[EUR][1000 genomes]
rs1354787	0.80[EUR][1000 genomes]
rs1395489	0.92[CEU][hapmap];0.92[CHB][hapmap]
rs1395492	0.82[EUR][1000 genomes]
rs1395494	0.80[EUR][1000 genomes]
rs1506847	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1506848	0.80[EUR][1000 genomes]
rs1605325	0.80[EUR][1000 genomes]
rs1911247	0.83[EUR][1000 genomes]
rs2198779	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2359979	0.93[CHB][hapmap];0.84[JPT][hapmap];0.80[ASN][1000 genomes]
rs2360681	0.85[CEU][hapmap]
rs2360682	0.83[EUR][1000 genomes]
rs3759287	0.93[CHB][hapmap];0.85[JPT][hapmap];0.80[ASN][1000 genomes]
rs3759289	0.92[CHB][hapmap];0.85[JPT][hapmap];0.80[ASN][1000 genomes]
rs4427611	0.93[CHB][hapmap];0.85[JPT][hapmap]
rs6581408	0.80[EUR][1000 genomes]
rs6581415	0.82[EUR][1000 genomes]
rs6581416	0.83[EUR][1000 genomes]
rs6581418	0.92[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6581419	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6581426	0.93[CEU][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6581430	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6581431	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6581432	1.00[CEU][hapmap]
rs7135492	0.82[EUR][1000 genomes]
rs7136512	0.80[EUR][1000 genomes]
rs7137928	0.83[EUR][1000 genomes]
rs7297180	0.83[EUR][1000 genomes]
rs7301397	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7303770	0.83[EUR][1000 genomes]
rs7306730	0.83[EUR][1000 genomes]
rs7314715	0.82[EUR][1000 genomes]
rs7398155	0.92[CEU][hapmap];1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7487386	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7488724	0.83[EUR][1000 genomes]
rs7954202	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7957259	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7959668	1.00[CEU][hapmap]
rs7960162	0.92[CEU][hapmap]
rs7964077	0.82[EUR][1000 genomes]
rs7974958	0.85[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7977950	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs9783426	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039741	chr12:62046850-62491052	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv899151	chr12:62108648-62227606	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv977138	chr12:62199079-62211306	Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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