Variant report

Variant	rs7487386
Chromosome Location	chr12:62144325-62144326
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs1031579	1.00[CHB][hapmap]
rs1031581	1.00[CHB][hapmap]
rs1031582	1.00[CHB][hapmap]
rs1031583	0.92[CHB][hapmap]
rs10735896	1.00[CHB][hapmap]
rs10735897	1.00[CHB][hapmap]
rs10747941	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10747942	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10784252	0.92[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10784263	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10784264	0.92[CEU][hapmap]
rs10784270	1.00[CHB][hapmap]
rs10784271	0.92[CHB][hapmap]
rs10877716	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1354787	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1395489	0.92[CEU][hapmap];0.92[CHB][hapmap];0.89[EUR][1000 genomes]
rs1395492	0.92[EUR][1000 genomes]
rs1395494	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1506847	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1506848	0.90[EUR][1000 genomes]
rs1605325	0.90[EUR][1000 genomes]
rs1911247	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1983133	0.88[EUR][1000 genomes]
rs2168452	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2198779	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2359979	1.00[CHB][hapmap]
rs2360681	0.84[CEU][hapmap]
rs2360682	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3759287	1.00[CHB][hapmap]
rs3759289	1.00[CHB][hapmap]
rs4310677	0.87[EUR][1000 genomes]
rs4427611	1.00[CHB][hapmap]
rs4495952	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6581408	0.90[EUR][1000 genomes]
rs6581415	0.92[EUR][1000 genomes]
rs6581416	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6581418	0.92[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6581419	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6581426	0.93[CEU][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6581430	0.92[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6581431	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6581432	1.00[CEU][hapmap]
rs7135492	0.92[EUR][1000 genomes]
rs7136512	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7137928	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7297180	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7301397	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7303770	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7306730	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7314715	0.91[EUR][1000 genomes]
rs7398155	0.92[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7488724	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7954202	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7957259	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7959668	1.00[CEU][hapmap]
rs7960162	0.92[CEU][hapmap]
rs7964077	0.92[EUR][1000 genomes]
rs7974958	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7977950	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs7980597	0.85[CHB][hapmap]
rs9783426	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042044	chr12:61256015-62196885	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1039741	chr12:62046850-62491052	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv899151	chr12:62108648-62227606	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv826402	chr12:62116803-62178453	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv826403	chr12:62130037-62190482	ZNF genes & repeats Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:62140400-62147200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr12:62140800-62149200	Weak transcription	Ovary	ovary
3	chr12:62142600-62144400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr12:62143800-62146000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr12:62144000-62145400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr12:62144200-62144800	Enhancers	Adipose Nuclei	Adipose
7	chr12:62144200-62145000	Enhancers	Liver	Liver

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