Variant report
| Variant | rs10784264 |
|---|---|
| Chromosome Location | chr12:62203736-62203737 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr12:62202859..62205384-chr12:62210206..62212570,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10784252 | 0.83[CEU][hapmap];0.80[EUR][1000 genomes] |
| rs10784263 | 0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs1395489 | 0.83[CEU][hapmap] |
| rs1506848 | 0.82[EUR][1000 genomes] |
| rs1605325 | 0.82[EUR][1000 genomes] |
| rs1869893 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs2168452 | 0.93[CEU][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs2198779 | 0.94[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs2360681 | 0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs6581418 | 0.83[CEU][hapmap];0.80[EUR][1000 genomes] |
| rs6581419 | 0.80[EUR][1000 genomes] |
| rs6581426 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs6581430 | 0.83[CEU][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs6581431 | 0.94[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs6581432 | 1.00[CEU][hapmap] |
| rs7301397 | 0.82[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs7398155 | 0.83[CEU][hapmap] |
| rs7487386 | 0.92[CEU][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs7954202 | 0.80[EUR][1000 genomes] |
| rs7957259 | 0.92[CEU][hapmap];0.80[EUR][1000 genomes] |
| rs7959668 | 0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs7960162 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs7974958 | 0.88[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs7977950 | 0.92[CEU][hapmap] |
| rs973121 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1039741 | chr12:62046850-62491052 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv899151 | chr12:62108648-62227606 | Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv977138 | chr12:62199079-62211306 | Weak transcription ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | esv11147 | chr12:62199825-62210977 | ZNF genes & repeats Weak transcription | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 5 | esv3497041 | chr12:62200665-62211108 | ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 6 | esv3497052 | chr12:62200665-62211108 | ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 7 | esv2421373 | chr12:62202570-62210820 | ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 8 | nsv442272 | chr12:62202570-62210820 | ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 9 | nsv514672 | chr12:62202621-62210789 | ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
