Variant report

Variant	rs973121
Chromosome Location	chr12:62218249-62218250
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10784263	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10784264	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12308834	1.00[CHB][hapmap]
rs1869893	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2168452	0.89[EUR][1000 genomes]
rs2198779	0.89[EUR][1000 genomes]
rs2360681	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs6581426	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6581430	0.84[EUR][1000 genomes]
rs6581431	0.85[EUR][1000 genomes]
rs7959668	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7960162	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039741	chr12:62046850-62491052	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv899151	chr12:62108648-62227606	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links