Variant report

Variant	rs4495952
Chromosome Location	chr12:62064618-62064619
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10747941	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10747942	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10784252	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10877716	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1354787	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1395489	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1395492	0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1395494	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1506847	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1506848	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1605325	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1876278	0.94[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1911247	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1983133	0.88[EUR][1000 genomes]
rs2360682	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4310677	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6581408	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6581415	0.92[EUR][1000 genomes]
rs6581416	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6581418	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6581419	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6581426	0.83[EUR][1000 genomes]
rs6581430	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7135492	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7136512	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7137928	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7297180	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7301397	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7303770	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7306730	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7314715	0.91[EUR][1000 genomes]
rs7398155	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7487386	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7488724	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7954202	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7957259	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7964077	0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7974958	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9783426	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042044	chr12:61256015-62196885	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1039741	chr12:62046850-62491052	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:62064000-62065400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr12:62064200-62065000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr12:62064200-62066000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell

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