Variant report

Variant	rs4398536
Chromosome Location	chr4:125539463-125539464
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10452156	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11726448	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11728357	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11735627	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1390079	0.96[EUR][1000 genomes]
rs28854561	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34805939	0.96[EUR][1000 genomes]
rs6820002	1.00[ASN][1000 genomes]
rs6839780	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6842707	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6846249	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73847516	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868977	chr4:124841128-125550637	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv966542	chr4:125528212-125539843	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125523800-125552800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr4:125524800-125546000	Weak transcription	HUVEC	blood vessel
3	chr4:125524800-125553000	Weak transcription	HSMMtube	muscle
4	chr4:125526400-125545000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr4:125531800-125544200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr4:125536000-125546000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr4:125536600-125552600	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr4:125537200-125546000	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr4:125537800-125539600	Weak transcription	Fetal Lung	lung
10	chr4:125538600-125539600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr4:125538600-125539600	ZNF genes & repeats	Fetal Stomach	stomach
12	chr4:125538600-125540000	ZNF genes & repeats	Aorta	Aorta
13	chr4:125538800-125540000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr4:125538800-125540000	ZNF genes & repeats	Fetal Muscle Leg	muscle
15	chr4:125539000-125561200	Weak transcription	Ovary	ovary
16	chr4:125539200-125540000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr4:125539200-125540000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr4:125539200-125541400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr4:125539200-125548400	Weak transcription	Lung	lung
20	chr4:125539200-125572400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr4:125539400-125552200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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