The 2.0 version of rSNPBase

Variant report

Variant rs6820002
Chromosome Location chr4:125631199-125631200
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:101 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr4:125593000-125631200 Weak transcription Esophagus oesophagus
2 chr4:125593400-125631200 Weak transcription Thymus Thymus
3 chr4:125594200-125631200 Weak transcription Fetal Thymus thymus
4 chr4:125597400-125631200 Weak transcription Rectal Mucosa Donor 31 rectum
5 chr4:125607800-125631200 Weak transcription Left Ventricle heart
6 chr4:125611600-125632400 Weak transcription Stomach Mucosa stomach
7 chr4:125616600-125631200 Weak transcription Lung lung
8 chr4:125616800-125631200 Weak transcription H9 Cell Line embryonic stem cell
9 chr4:125616800-125631200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
10 chr4:125620000-125631400 Weak transcription Brain Anterior Caudate brain
11 chr4:125622400-125632600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
12 chr4:125623000-125631200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
13 chr4:125625600-125633000 Weak transcription Small Intestine intestine
14 chr4:125625800-125631800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
15 chr4:125629000-125631200 Active TSS Fetal Brain Female brain
16 chr4:125629200-125631800 Enhancers Primary monocytes fromperipheralblood blood
17 chr4:125629200-125632800 Flanking Active TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
18 chr4:125629400-125631200 Active TSS Fetal Stomach stomach
19 chr4:125629400-125632200 Transcr. at gene 5' and 3' HUES64 Cell Line embryonic stem cell
20 chr4:125629400-125632200 Flanking Active TSS Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
21 chr4:125629600-125631200 Active TSS H1 Cell Line embryonic stem cell
22 chr4:125629600-125631200 Genic enhancers H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
23 chr4:125629600-125631200 Active TSS Fetal Muscle Leg muscle
24 chr4:125629600-125631200 Active TSS Ovary ovary
25 chr4:125629600-125631200 Active TSS Hela-S3 cervix
26 chr4:125629600-125631600 Flanking Active TSS Fetal Brain Male brain
27 chr4:125629600-125632600 Enhancers HepG2 liver
28 chr4:125629600-125633400 Active TSS Right Atrium heart
29 chr4:125629800-125631200 Active TSS iPS-15b Cell Line embryonic stem cell
30 chr4:125629800-125632400 Active TSS Rectal Mucosa Donor 29 rectum
31 chr4:125630000-125631200 Active TSS hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
32 chr4:125630000-125631200 Weak transcription Brain Substantia Nigra brain
33 chr4:125630000-125631200 Weak transcription Psoas Muscle Psoas
34 chr4:125630000-125631200 Weak transcription Right Ventricle heart
35 chr4:125630000-125631200 Active TSS HSMMtube muscle
36 chr4:125630000-125631200 Active TSS HUVEC blood vessel
37 chr4:125630000-125631200 Active TSS K562 blood
38 chr4:125630000-125631600 Active TSS HUES6 Cell Line embryonic stem cell
39 chr4:125630000-125631600 Flanking Active TSS Muscle Satellite Cultured Cells --
40 chr4:125630000-125634800 Active TSS Foreskin Melanocyte Primary Cells skin01 Skin
41 chr4:125630200-125631200 Enhancers Primary hematopoietic stem cells blood
42 chr4:125630200-125631200 Enhancers Adipose Nuclei Adipose
43 chr4:125630200-125631200 Active TSS Fetal Intestine Small intestine
44 chr4:125630200-125631200 Active TSS Fetal Muscle Trunk muscle
45 chr4:125630200-125631400 Enhancers Brain Hippocampus Middle brain
46 chr4:125630200-125632600 Enhancers Liver Liver
47 chr4:125630400-125631200 Active TSS hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
48 chr4:125630400-125631200 Weak transcription Duodenum Mucosa Duodenum
49 chr4:125630400-125631200 Active TSS Fetal Intestine Large intestine
50 chr4:125630400-125631200 Weak transcription Rectal Smooth Muscle rectum

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Last update: Aug 31, 2015