Variant report

Variant	rs4398822
Chromosome Location	chr7:102567169-102567170
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:102562952..102565366-chr7:102565830..102568184,3	MCF-7	breast:
2	chr7:102558852..102560445-chr7:102565710..102568123,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10487281	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10487284	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11487077	0.88[CEU][hapmap];0.88[LWK][hapmap]
rs11496066	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12113073	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12113759	1.00[CHB][hapmap]
rs17135875	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17135913	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17135916	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17474893	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2041094	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2411061	1.00[CHB][hapmap]
rs3893651	1.00[ASN][1000 genomes]
rs4377880	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs4610658	1.00[CHB][hapmap]
rs55681588	1.00[ASN][1000 genomes]
rs55781834	1.00[ASN][1000 genomes]
rs55825804	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56314487	1.00[ASN][1000 genomes]
rs56692051	1.00[ASN][1000 genomes]
rs6955064	1.00[ASN][1000 genomes]
rs6964296	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6968036	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs727175	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs73192015	1.00[ASN][1000 genomes]
rs73192019	1.00[ASN][1000 genomes]
rs7779854	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7781557	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7809047	1.00[CHB][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016563	chr7:101912320-102695860	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1028438	chr7:101912320-102704135	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	nsv868996	chr7:102332827-102991361	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	esv2752138	chr7:102358320-102787135	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
5	nsv608058	chr7:102466741-102571713	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv464667	chr7:102486254-102624192	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
7	nsv608060	chr7:102486254-102624192	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:102517200-102578200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr7:102558000-102567200	Weak transcription	Fetal Kidney	kidney
3	chr7:102558200-102567600	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr7:102565200-102569200	Enhancers	Fetal Lung	lung
5	chr7:102565800-102569800	Genic enhancers	HSMM	muscle
6	chr7:102566000-102567800	Enhancers	NHLF	lung
7	chr7:102566000-102568000	Enhancers	H1 Cell Line	embryonic stem cell
8	chr7:102566000-102568400	Enhancers	Muscle Satellite Cultured Cells	--
9	chr7:102566200-102568800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr7:102566400-102567200	Enhancers	H9 Cell Line	embryonic stem cell
11	chr7:102566400-102567600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr7:102566400-102567600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr7:102566400-102567600	Enhancers	HSMMtube	muscle
14	chr7:102566400-102567600	Enhancers	HUVEC	blood vessel
15	chr7:102566400-102567800	Enhancers	NHDF-Ad	bronchial
16	chr7:102566400-102568200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr7:102566400-102568200	Genic enhancers	K562	blood
18	chr7:102566400-102568200	Enhancers	NH-A	brain
19	chr7:102566400-102568400	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr7:102566400-102568600	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr7:102566400-102568600	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr7:102566400-102568600	Enhancers	iPS-20b Cell Line	embryonic stem cell
23	chr7:102566400-102568600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr7:102566400-102568600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr7:102566400-102568600	Enhancers	Osteobl	bone
26	chr7:102566600-102567600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr7:102566600-102568200	Enhancers	ES-I3 Cell Line	embryonic stem cell
28	chr7:102566600-102568200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr7:102566600-102568200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
30	chr7:102566600-102568400	Enhancers	iPS-18 Cell Line	embryonic stem cell
31	chr7:102566600-102568400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr7:102566600-102568400	Enhancers	Hela-S3	cervix
33	chr7:102566600-102568600	Enhancers	HUES64 Cell Line	embryonic stem cell
34	chr7:102566600-102568600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr7:102566600-102568600	Enhancers	Cortex derived primary cultured neurospheres	brain
36	chr7:102566600-102568600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr7:102566600-102568600	Enhancers	A549	lung
38	chr7:102566600-102568800	Enhancers	Brain Germinal Matrix	brain
39	chr7:102566600-102569400	Weak transcription	Psoas Muscle	Psoas
40	chr7:102566800-102567400	Weak transcription	Fetal Stomach	stomach
41	chr7:102566800-102567800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr7:102566800-102568000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr7:102566800-102568000	Weak transcription	Aorta	Aorta
44	chr7:102566800-102568000	Weak transcription	Ovary	ovary
45	chr7:102566800-102568000	Weak transcription	Right Atrium	heart
46	chr7:102566800-102568200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr7:102566800-102568800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr7:102566800-102573000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr7:102567000-102567400	Weak transcription	Fetal Muscle Leg	muscle
50	chr7:102567000-102568200	Enhancers	HMEC	breast

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