Variant report
| Variant | rs4400920 |
|---|---|
| Chromosome Location | chr13:91609040-91609041 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr13:91603674..91606543-chr13:91608214..91610277,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs4238295 | 0.82[CHB][hapmap] |
| rs4264263 | 0.82[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs4329788 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4347494 | 0.84[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs4378502 | 0.97[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs4511388 | 0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs4514538 | 0.85[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs4771828 | 0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs5005996 | 0.91[ASN][1000 genomes] |
| rs6492513 | 0.85[CEU][hapmap];0.81[CHB][hapmap] |
| rs6492517 | 0.82[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs67609503 | 0.85[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs7324977 | 0.88[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs7333894 | 0.82[CHB][hapmap] |
| rs8000102 | 0.85[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs9515865 | 0.85[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs9515866 | 0.85[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs9515873 | 0.91[ASN][1000 genomes] |
| rs9523202 | 0.99[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs9523206 | 0.85[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs9523208 | 0.85[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs9523225 | 0.85[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs9560728 | 0.97[ASN][1000 genomes] |
| rs9583855 | 0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv948709 | chr13:90753085-91745571 | Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 22 gene(s) | inside rSNPs | diseases |
| 2 | nsv932206 | chr13:91370888-91878374 | Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 3 | nsv1042947 | chr13:91571040-92416897 | Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 1946 gene(s) | inside rSNPs | diseases |
| 4 | nsv541871 | chr13:91571040-92416897 | Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 1946 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:91608000-91609200 | Enhancers | A549 | lung |
