Variant report

Variant	rs4238295
Chromosome Location	chr13:91648070-91648071
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:91590964..91593450-chr13:91647110..91649272,2	K562	blood:
2	chr13:91645861..91648178-chr13:91998721..92001281,2	K562	blood:
3	chr13:91639571..91641593-chr13:91646155..91648079,2	K562	blood:

Variant related genes	Relation type
ENSG00000215417	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1031397	0.88[ASN][1000 genomes]
rs12708387	0.83[ASN][1000 genomes]
rs1459445	0.82[CEU][hapmap]
rs1459446	0.81[CEU][hapmap]
rs1542294	0.89[ASN][1000 genomes]
rs1547339	0.95[ASN][1000 genomes]
rs2061461	0.81[CEU][hapmap]
rs2218906	0.95[ASN][1000 genomes]
rs4264263	0.99[ASN][1000 genomes]
rs4347494	0.99[ASN][1000 genomes]
rs4378502	0.99[ASN][1000 genomes]
rs4514538	0.99[ASN][1000 genomes]
rs4584688	0.95[ASN][1000 genomes]
rs5005996	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6492513	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs6492517	0.99[ASN][1000 genomes]
rs67609503	0.99[ASN][1000 genomes]
rs7321153	0.89[ASN][1000 genomes]
rs7324977	0.99[ASN][1000 genomes]
rs7333894	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7983743	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8000102	0.99[ASN][1000 genomes]
rs8003008	0.95[ASN][1000 genomes]
rs898272	0.82[CEU][hapmap]
rs898273	0.82[CEU][hapmap]
rs9301700	0.80[CHB][hapmap];0.90[JPT][hapmap]
rs9515865	0.99[ASN][1000 genomes]
rs9515866	0.99[ASN][1000 genomes]
rs9515869	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9515872	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9515873	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9523189	0.87[ASN][1000 genomes]
rs9523200	0.95[ASN][1000 genomes]
rs9523202	0.99[ASN][1000 genomes]
rs9523206	0.99[ASN][1000 genomes]
rs9523208	0.99[ASN][1000 genomes]
rs9523225	0.97[ASN][1000 genomes]
rs9560728	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs958368	0.85[ASN][1000 genomes]
rs961617	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948709	chr13:90753085-91745571	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv932206	chr13:91370888-91878374	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1042947	chr13:91571040-92416897	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1946 gene(s)	inside rSNPs	diseases
4	nsv541871	chr13:91571040-92416897	Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1946 gene(s)	inside rSNPs	diseases
5	nsv900878	chr13:91619133-91717352	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv900879	chr13:91619133-91726884	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv900880	chr13:91625722-91848290	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:91647200-91648600	Enhancers	Fetal Brain Male	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links