Variant report

Variant	rs1547339
Chromosome Location	chr13:91594877-91594878
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1031397	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12708387	0.83[ASN][1000 genomes]
rs1542294	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1932254	0.84[ASN][1000 genomes]
rs2218906	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2351244	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs272093	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4238295	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs4264263	0.96[ASN][1000 genomes]
rs4347494	0.96[ASN][1000 genomes]
rs4378502	0.96[ASN][1000 genomes]
rs4514538	0.96[ASN][1000 genomes]
rs4584688	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6492513	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6492517	0.96[ASN][1000 genomes]
rs67609503	0.96[ASN][1000 genomes]
rs7321153	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7324977	0.96[ASN][1000 genomes]
rs7333894	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7983743	0.92[ASN][1000 genomes]
rs8000102	0.96[ASN][1000 genomes]
rs8003008	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9301700	0.89[JPT][hapmap]
rs9515865	0.96[ASN][1000 genomes]
rs9515866	0.96[ASN][1000 genomes]
rs9515869	0.92[ASN][1000 genomes]
rs9515872	0.85[ASN][1000 genomes]
rs9523189	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9523200	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9523202	0.96[ASN][1000 genomes]
rs9523206	0.96[ASN][1000 genomes]
rs9523208	0.96[ASN][1000 genomes]
rs9523225	0.92[ASN][1000 genomes]
rs958368	0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs961617	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948709	chr13:90753085-91745571	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv932206	chr13:91370888-91878374	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1042947	chr13:91571040-92416897	Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1946 gene(s)	inside rSNPs	diseases
4	nsv541871	chr13:91571040-92416897	Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1946 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:91594800-91595200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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