Variant report

Variant	rs961617
Chromosome Location	chr13:91558060-91558061
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1031397	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12708387	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1542294	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1547339	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1932254	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2218906	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4238295	0.91[ASN][1000 genomes]
rs4264263	0.92[ASN][1000 genomes]
rs4347494	0.92[ASN][1000 genomes]
rs4378502	0.92[ASN][1000 genomes]
rs4514538	0.92[ASN][1000 genomes]
rs4584688	0.96[ASN][1000 genomes]
rs6492513	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6492517	0.92[ASN][1000 genomes]
rs67609503	0.92[ASN][1000 genomes]
rs7321153	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7324977	0.92[ASN][1000 genomes]
rs7333894	0.91[ASN][1000 genomes]
rs7983743	0.88[ASN][1000 genomes]
rs8000102	0.92[ASN][1000 genomes]
rs8003008	0.96[ASN][1000 genomes]
rs9301700	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9515865	0.92[ASN][1000 genomes]
rs9515866	0.92[ASN][1000 genomes]
rs9515869	0.88[ASN][1000 genomes]
rs9515872	0.84[ASN][1000 genomes]
rs9523189	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9523200	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9523202	0.92[ASN][1000 genomes]
rs9523206	0.92[ASN][1000 genomes]
rs9523208	0.92[ASN][1000 genomes]
rs9523225	0.88[ASN][1000 genomes]
rs958368	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948709	chr13:90753085-91745571	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv932206	chr13:91370888-91878374	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:91543800-91570800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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