Variant report

Variant	rs4403042
Chromosome Location	chr4:81960546-81960547
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:81955196..81958140-chr4:81960309..81962642,2	K562	blood:
2	chr4:81282233..81283176-chr4:81960486..81961821,6	MCF-7	breast:
3	chr4:81948165..81950015-chr4:81959647..81961556,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10019046	0.84[MKK][hapmap];0.82[YRI][hapmap]
rs10857206	1.00[CEU][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11099459	0.82[YRI][hapmap]
rs11727701	1.00[CEU][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12647814	1.00[CEU][hapmap]
rs2868076	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs2903745	1.00[ASW][hapmap];1.00[CEU][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4270580	1.00[ASW][hapmap];1.00[CEU][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4403043	1.00[CEU][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6851199	1.00[CEU][hapmap]
rs6851374	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999729	chr4:81802554-82627820	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv537156	chr4:81802554-82627820	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1006466	chr4:81888983-82009675	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:81955000-81973400	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr4:81955400-81967200	Weak transcription	Fetal Stomach	stomach
3	chr4:81958800-81961800	Enhancers	Colon Smooth Muscle	Colon
4	chr4:81958800-81961800	Enhancers	Rectal Smooth Muscle	rectum
5	chr4:81959200-81960800	Enhancers	Stomach Smooth Muscle	stomach
6	chr4:81959600-81961600	Enhancers	Fetal Intestine Small	intestine
7	chr4:81959800-81961200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr4:81960000-81961400	Enhancers	Primary B cells from cord blood	blood
9	chr4:81960200-81960600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr4:81960200-81960800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr4:81960200-81960800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr4:81960200-81961000	Enhancers	Duodenum Mucosa	Duodenum
13	chr4:81960200-81961000	Bivalent Enhancer	Osteobl	bone
14	chr4:81960200-81961200	Enhancers	GM12878-XiMat	blood
15	chr4:81960200-81961600	Enhancers	Fetal Lung	lung
16	chr4:81960200-81961600	Enhancers	Ovary	ovary
17	chr4:81960200-81961800	Enhancers	Fetal Intestine Large	intestine
18	chr4:81960400-81960800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr4:81960400-81960800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr4:81960400-81960800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr4:81960400-81960800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr4:81960400-81973400	Weak transcription	Sigmoid Colon	Sigmoid Colon

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