Variant report

Variant	rs4406042
Chromosome Location	chr4:121882637-121882638
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11734432	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1376104	1.00[AFR][1000 genomes]
rs1376106	1.00[AFR][1000 genomes]
rs17050462	1.00[MEX][hapmap]
rs1817033	0.82[AFR][1000 genomes]
rs1817036	1.00[AMR][1000 genomes]
rs1868716	1.00[AMR][1000 genomes]
rs1901137	1.00[AFR][1000 genomes]
rs1901138	0.84[AFR][1000 genomes]
rs2390063	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2390064	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2892921	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs343182	0.82[YRI][hapmap]
rs4257672	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4368630	1.00[AMR][1000 genomes]
rs4422434	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4422435	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6534227	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6534228	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6825508	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6836209	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs6851414	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6852202	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6852244	1.00[AFR][1000 genomes]
rs6852366	1.00[MEX][hapmap]
rs6852427	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998094	chr4:121504565-122374203	Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1009395	chr4:121841442-122557363	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv537235	chr4:121841442-122557363	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	esv3386870	chr4:121867625-122208448	Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4406042	DHRS9	trans	lymphoblastoid	seeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:121882400-121885600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:121882600-121883000	Enhancers	Rectal Mucosa Donor 31	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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