Variant report

No.	Distal block	Cell Line	Cell type
1	chr16:80052898..80058811-chr16:80059069..80065197,11	MCF-7	breast:
2	chr16:79802080..79804842-chr16:80056465..80059230,3	MCF-7	breast:
3	chr16:80045568..80049024-chr16:80056361..80060062,5	MCF-7	breast:
4	chr16:79633721..79635962-chr16:80055952..80057960,3	MCF-7	breast:
5	chr16:80051534..80054466-chr16:80056610..80058867,2	MCF-7	breast:
6	chr16:80046883..80048814-chr16:80056548..80058307,2	MCF-7	breast:
7	chr16:80049883..80052966-chr16:80055781..80058097,4	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11645922	0.88[EUR][1000 genomes]
rs12716881	0.82[EUR][1000 genomes]
rs12921255	0.88[EUR][1000 genomes]
rs13333795	0.87[EUR][1000 genomes]
rs4354957	0.83[CEU][hapmap]
rs4363873	0.88[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4365299	0.87[CEU][hapmap];0.83[EUR][1000 genomes]
rs4392090	0.81[JPT][hapmap]
rs4402582	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4500741	0.87[CEU][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4545830	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4888067	0.84[EUR][1000 genomes]
rs4889067	0.95[CEU][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4889068	0.95[CEU][hapmap];0.89[EUR][1000 genomes]
rs4889084	0.80[EUR][1000 genomes]
rs4889086	0.80[EUR][1000 genomes]
rs4889090	0.81[CEU][hapmap];0.80[EUR][1000 genomes]
rs6564728	0.87[CEU][hapmap]
rs7184607	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7192544	0.80[EUR][1000 genomes]
rs7192753	0.87[CEU][hapmap]
rs7193465	0.83[CEU][hapmap];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8050142	0.82[CEU][hapmap];0.81[EUR][1000 genomes]
rs8050160	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs8059251	0.80[EUR][1000 genomes]
rs9937844	0.95[CEU][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9940390	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv573294	chr16:80005642-80131944	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80040400-80057200	Weak transcription	Esophagus	oesophagus
2	chr16:80049800-80057200	Weak transcription	HSMMtube	muscle
3	chr16:80054600-80057200	Weak transcription	Fetal Stomach	stomach
4	chr16:80054600-80057600	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr16:80056400-80057200	Enhancers	A549	lung

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