Variant report

Variant	rs4545830
Chromosome Location	chr16:80057337-80057338
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:80052898..80058811-chr16:80059069..80065197,11	MCF-7	breast:
2	chr16:79802080..79804842-chr16:80056465..80059230,3	MCF-7	breast:
3	chr16:80045568..80049024-chr16:80056361..80060062,5	MCF-7	breast:
4	chr16:79633721..79635962-chr16:80055952..80057960,3	MCF-7	breast:
5	chr16:80051534..80054466-chr16:80056610..80058867,2	MCF-7	breast:
6	chr16:80032529..80034163-chr16:80057052..80059822,2	MCF-7	breast:
7	chr16:80056858..80058802-chr16:80070010..80071819,2	MCF-7	breast:
8	chr16:80046883..80048814-chr16:80056548..80058307,2	MCF-7	breast:
9	chr16:80049883..80052966-chr16:80055781..80058097,4	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11645922	0.84[EUR][1000 genomes]
rs12921255	0.84[EUR][1000 genomes]
rs13333795	0.82[EUR][1000 genomes]
rs4363873	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4402582	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4407073	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4500741	0.81[EUR][1000 genomes]
rs4889067	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4889068	0.84[EUR][1000 genomes]
rs7184607	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7193465	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9937844	0.84[EUR][1000 genomes]
rs9940390	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv573294	chr16:80005642-80131944	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80054600-80057600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr16:80057000-80058400	Enhancers	Muscle Satellite Cultured Cells	--
3	chr16:80057000-80059000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr16:80057200-80057400	Flanking Active TSS	A549	lung
5	chr16:80057200-80058000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr16:80057200-80058000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr16:80057200-80058000	Enhancers	Colon Smooth Muscle	Colon
8	chr16:80057200-80058000	Enhancers	Esophagus	oesophagus
9	chr16:80057200-80058000	Enhancers	HSMM	muscle
10	chr16:80057200-80058200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr16:80057200-80058200	Enhancers	NH-A	brain
12	chr16:80057200-80058400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr16:80057200-80058400	Enhancers	Osteobl	bone
14	chr16:80057200-80058600	Enhancers	HUVEC	blood vessel
15	chr16:80057200-80059000	Enhancers	HSMMtube	muscle
16	chr16:80057200-80059600	Enhancers	Fetal Stomach	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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