Variant report
| Variant | rs4407146 |
|---|---|
| Chromosome Location | chr18:44926860-44926861 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs10083906 | 0.88[ASN][1000 genomes] |
| rs10853551 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs10853552 | 0.88[ASN][1000 genomes] |
| rs11082578 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs11082579 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs11082583 | 0.88[ASN][1000 genomes] |
| rs11875780 | 0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs12955529 | 0.88[ASN][1000 genomes] |
| rs12956050 | 0.88[ASN][1000 genomes] |
| rs1865370 | 0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs28687120 | 0.85[AFR][1000 genomes];0.84[AMR][1000 genomes] |
| rs34046363 | 0.82[EUR][1000 genomes] |
| rs34423240 | 0.82[EUR][1000 genomes] |
| rs34777063 | 0.81[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs34885067 | 0.88[ASN][1000 genomes] |
| rs7230517 | 0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs7230554 | 0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs7231544 | 0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs7231597 | 0.88[ASN][1000 genomes] |
| rs8088348 | 0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv833641 | chr18:44815063-45020202 | Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionChromatin interactive regionlncRNAmiRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | esv1801141 | chr18:44908270-44955409 | Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | esv21357 | chr18:44925360-44928518 | Weak transcription | n/a | n/a | inside rSNPs | diseases |
| 4 | esv3505306 | chr18:44925654-44930052 | Weak transcription Enhancers | n/a | n/a | inside rSNPs | diseases |
| 5 | esv3505309 | chr18:44926229-44930077 | Weak transcription Enhancers | n/a | n/a | inside rSNPs | diseases |
| 6 | esv3375590 | chr18:44926479-44929327 | Weak transcription | n/a | n/a | inside rSNPs | diseases |
| 7 | esv16703 | chr18:44926638-44929859 | Enhancers Weak transcription | n/a | n/a | inside rSNPs | diseases |
| 8 | nsv820911 | chr18:44926638-44929859 | Weak transcription Enhancers | n/a | n/a | inside rSNPs | diseases |
| 9 | esv3505308 | chr18:44926760-44929006 | Weak transcription | n/a | n/a | inside rSNPs | diseases |
| 10 | esv3505310 | chr18:44926760-44929006 | Weak transcription | n/a | n/a | inside rSNPs | diseases |
| 11 | esv1810690 | chr18:44926844-44929301 | Weak transcription | n/a | n/a | inside rSNPs | diseases |
| 12 | esv1815121 | chr18:44926844-44929301 | Weak transcription | n/a | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr18:44925000-44929600 | Weak transcription | Pancreas | Pancrea |
