Variant report

Variant	rs4408937
Chromosome Location	chr4:47445201-47445202
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10010080	0.99[AFR][1000 genomes]
rs10012665	0.99[AFR][1000 genomes]
rs10013564	0.95[AFR][1000 genomes]
rs10016116	0.93[AFR][1000 genomes]
rs10016711	0.94[YRI][hapmap];0.92[AFR][1000 genomes]
rs10017635	0.99[AFR][1000 genomes]
rs10020234	0.99[AFR][1000 genomes]
rs10020578	0.99[AFR][1000 genomes]
rs10023931	0.95[AFR][1000 genomes]
rs10024088	0.95[AFR][1000 genomes]
rs10025348	0.92[YRI][hapmap];0.95[AFR][1000 genomes]
rs10028747	0.93[AFR][1000 genomes]
rs10031409	0.95[AFR][1000 genomes]
rs10032089	0.99[AFR][1000 genomes]
rs28401446	0.83[AFR][1000 genomes]
rs28419082	0.96[AFR][1000 genomes]
rs28420192	0.97[AFR][1000 genomes]
rs28437469	0.91[AFR][1000 genomes]
rs28463624	0.95[AFR][1000 genomes]
rs28589311	0.93[AFR][1000 genomes]
rs28657923	0.95[AFR][1000 genomes]
rs28687404	0.95[AFR][1000 genomes]
rs55734368	0.99[AFR][1000 genomes]
rs56318530	0.97[AFR][1000 genomes]
rs57637672	0.99[AFR][1000 genomes]
rs57663033	0.99[AFR][1000 genomes]
rs58111381	0.99[AFR][1000 genomes]
rs58467459	0.97[AFR][1000 genomes]
rs58773051	0.85[AFR][1000 genomes]
rs60201780	0.99[AFR][1000 genomes]
rs60226159	0.97[AFR][1000 genomes]
rs60707722	0.95[AFR][1000 genomes]
rs60744249	0.95[AFR][1000 genomes]
rs60950802	0.99[AFR][1000 genomes]
rs60981397	0.96[AFR][1000 genomes]
rs61111807	0.95[AFR][1000 genomes]
rs6812797	0.99[AFR][1000 genomes]
rs6849185	0.99[AFR][1000 genomes]
rs73813534	0.99[AFR][1000 genomes]
rs73813544	0.95[AFR][1000 genomes]
rs73813545	0.95[AFR][1000 genomes]
rs73813546	0.95[AFR][1000 genomes]
rs7656397	0.94[YRI][hapmap];0.95[AFR][1000 genomes]
rs7660975	0.99[AFR][1000 genomes]
rs7664395	0.99[AFR][1000 genomes]
rs7664827	0.99[AFR][1000 genomes]
rs7665847	0.99[AFR][1000 genomes]
rs7669793	0.99[AFR][1000 genomes]
rs7681754	0.95[AFR][1000 genomes]
rs7682167	0.95[AFR][1000 genomes]
rs7686306	0.99[AFR][1000 genomes]
rs7695644	0.99[AFR][1000 genomes]
rs9990574	0.99[AFR][1000 genomes]
rs9995173	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998919	chr4:47207023-47476876	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv879005	chr4:47408838-47548254	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv829923	chr4:47436139-47678443	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:47436800-47465000	Weak transcription	Gastric	stomach
2	chr4:47438600-47464200	Weak transcription	Small Intestine	intestine
3	chr4:47441000-47456000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr4:47442200-47464000	Weak transcription	Left Ventricle	heart
5	chr4:47442800-47451800	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr4:47443600-47464000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr4:47444000-47453600	Weak transcription	HSMMtube	muscle
8	chr4:47444600-47446400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
9	chr4:47445000-47445600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
10	chr4:47445000-47445600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr4:47445000-47445600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr4:47445000-47445600	Enhancers	Thymus	Thymus
13	chr4:47445000-47446000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
14	chr4:47445000-47446200	Enhancers	Primary B cells from peripheral blood	blood
15	chr4:47445000-47446200	Enhancers	Dnd41	blood
16	chr4:47445000-47454800	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr4:47445200-47445400	Enhancers	Primary monocytes fromperipheralblood	blood
18	chr4:47445200-47445400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr4:47445200-47445400	Enhancers	GM12878-XiMat	blood
20	chr4:47445200-47446000	Enhancers	Primary B cells from cord blood	blood
21	chr4:47445200-47446800	Enhancers	Primary hematopoietic stem cells	blood
22	chr4:47445200-47453600	Weak transcription	NHDF-Ad	bronchial
23	chr4:47445200-47454600	Weak transcription	Fetal Intestine Small	intestine

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