Variant report

Variant	rs57637672
Chromosome Location	chr4:47447050-47447051
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10010080	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10012665	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10013564	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs10016116	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs10016711	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs10017635	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10020234	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10020578	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10023931	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs10024088	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs10025348	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs10028747	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs10031409	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs10032089	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28401446	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs28419082	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28420192	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28437469	0.92[AFR][1000 genomes]
rs28463624	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs28589311	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs28657923	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs28687404	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs4408937	0.99[AFR][1000 genomes]
rs55734368	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56318530	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57663033	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58111381	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58467459	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58773051	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs60201780	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60226159	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60707722	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs60744249	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs60950802	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60981397	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61111807	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs6812797	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6849185	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73813534	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73813544	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs73813545	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs73813546	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7656397	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7660975	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7664395	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7664827	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7665847	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7669793	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7681754	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7682167	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7686306	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7695644	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9990574	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9995173	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs9998398	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998919	chr4:47207023-47476876	Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv879005	chr4:47408838-47548254	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv829923	chr4:47436139-47678443	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:47436800-47465000	Weak transcription	Gastric	stomach
2	chr4:47438600-47464200	Weak transcription	Small Intestine	intestine
3	chr4:47441000-47456000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr4:47442200-47464000	Weak transcription	Left Ventricle	heart
5	chr4:47442800-47451800	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr4:47443600-47464000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr4:47444000-47453600	Weak transcription	HSMMtube	muscle
8	chr4:47445000-47454800	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr4:47445200-47453600	Weak transcription	NHDF-Ad	bronchial
10	chr4:47445200-47454600	Weak transcription	Fetal Intestine Small	intestine
11	chr4:47445400-47451400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr4:47445400-47453600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr4:47445400-47465000	Weak transcription	Lung	lung
14	chr4:47445600-47447200	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr4:47445600-47451000	Weak transcription	Primary T cells from cord blood	blood
16	chr4:47445600-47452000	Weak transcription	Stomach Smooth Muscle	stomach
17	chr4:47445600-47453400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr4:47445600-47453600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr4:47445600-47454600	Weak transcription	Ovary	ovary
20	chr4:47445600-47464000	Weak transcription	Pancreas	Pancrea
21	chr4:47445600-47464200	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr4:47445600-47464200	Weak transcription	Thymus	Thymus
23	chr4:47445800-47465000	Weak transcription	Aorta	Aorta
24	chr4:47446000-47447200	Enhancers	Primary hematopoietic stem cells short term culture	blood
25	chr4:47446000-47465000	Weak transcription	Esophagus	oesophagus
26	chr4:47446200-47447200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr4:47446200-47451800	Weak transcription	Dnd41	blood
28	chr4:47446200-47452000	Weak transcription	Primary B cells from peripheral blood	blood
29	chr4:47446200-47453600	Weak transcription	Primary neutrophils fromperipheralblood	blood
30	chr4:47446200-47453600	Weak transcription	GM12878-XiMat	blood
31	chr4:47446400-47447200	Enhancers	iPS-20b Cell Line	embryonic stem cell
32	chr4:47446400-47447200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
33	chr4:47446400-47447200	Enhancers	Monocytes-CD14+_RO01746	blood
34	chr4:47446600-47463000	Weak transcription	Brain Anterior Caudate	brain
35	chr4:47446800-47447200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr4:47446800-47447600	Strong transcription	Primary B cells from cord blood	blood
37	chr4:47446800-47452000	Weak transcription	Primary hematopoietic stem cells	blood
38	chr4:47447000-47449000	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr4:47447000-47453400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr4:47447000-47453600	Weak transcription	Fetal Thymus	thymus
41	chr4:47447000-47461400	Weak transcription	HUES64 Cell Line	embryonic stem cell

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