Variant report

Variant	rs4408956
Chromosome Location	chr4:15375918-15375919
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10516286	0.88[JPT][hapmap]
rs2430319	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4698376	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15355800-15377400	Weak transcription	Colon Smooth Muscle	Colon
2	chr4:15355800-15378000	Weak transcription	Rectal Smooth Muscle	rectum
3	chr4:15357400-15376800	Weak transcription	Primary B cells from cord blood	blood
4	chr4:15367600-15390600	Weak transcription	Spleen	Spleen
5	chr4:15368600-15376600	Weak transcription	Primary T cells from cord blood	blood
6	chr4:15371000-15376000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr4:15371000-15378000	Weak transcription	NH-A	brain
8	chr4:15372800-15376600	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr4:15372800-15376600	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr4:15373000-15376200	Weak transcription	Aorta	Aorta
11	chr4:15374800-15376200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr4:15375200-15376000	Enhancers	Muscle Satellite Cultured Cells	--
13	chr4:15375200-15376000	Enhancers	NHDF-Ad	bronchial
14	chr4:15375200-15376200	Weak transcription	HSMMtube	muscle
15	chr4:15375400-15376000	Flanking Active TSS	Fetal Lung	lung
16	chr4:15375400-15376000	Enhancers	HSMM	muscle
17	chr4:15375400-15376400	Enhancers	Fetal Stomach	stomach
18	chr4:15375800-15376000	Flanking Active TSS	Ovary	ovary
19	chr4:15375800-15376200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr4:15375800-15376200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr4:15375800-15376200	Flanking Active TSS	Adipose Nuclei	Adipose
22	chr4:15375800-15376200	Enhancers	Placenta	Placenta
23	chr4:15375800-15376200	Flanking Active TSS	NHLF	lung
24	chr4:15375800-15376400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr4:15375800-15376800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr4:15375800-15376800	Bivalent/Poised TSS	Skeletal Muscle Male	skeletal muscle
27	chr4:15375800-15378000	Weak transcription	Placenta Amnion	Placenta Amnion

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