Variant report

Variant	rs10516286
Chromosome Location	chr4:15375167-15375168
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr4:15375151-15375275	MCF10A-Er-Src	breast:	n/a	n/a
2	FOS	chr4:15375116-15375286	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
C1QTNF7	TF binding region

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs16891755	0.81[JPT][hapmap]
rs16891760	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16891829	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16891838	0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1861049	1.00[CEU][hapmap]
rs1861050	1.00[CEU][hapmap]
rs4235377	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4408956	0.88[JPT][hapmap]
rs6836616	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15355400-15375400	Weak transcription	Fetal Lung	lung
2	chr4:15355800-15377400	Weak transcription	Colon Smooth Muscle	Colon
3	chr4:15355800-15378000	Weak transcription	Rectal Smooth Muscle	rectum
4	chr4:15357400-15376800	Weak transcription	Primary B cells from cord blood	blood
5	chr4:15367600-15375200	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr4:15367600-15390600	Weak transcription	Spleen	Spleen
7	chr4:15368600-15375800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr4:15368600-15376600	Weak transcription	Primary T cells from cord blood	blood
9	chr4:15371000-15376000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr4:15371000-15378000	Weak transcription	NH-A	brain
11	chr4:15371200-15375200	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr4:15371400-15375800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr4:15371600-15375400	Weak transcription	HSMM	muscle
14	chr4:15372800-15376600	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr4:15372800-15376600	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr4:15373000-15376200	Weak transcription	Aorta	Aorta
17	chr4:15373400-15375400	Weak transcription	Fetal Stomach	stomach
18	chr4:15374800-15375200	Enhancers	HSMMtube	muscle
19	chr4:15374800-15375800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr4:15374800-15375800	Enhancers	NHLF	lung
21	chr4:15374800-15376200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr4:15375000-15375600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr4:15375000-15375800	Enhancers	Ovary	ovary

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